BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB07RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig850 759 0.0
3x_Contig376 315 8e-86
>3x_Contig850
Length = 2234
Score = 759 bits (383), Expect = 0.0
Identities = 431/441 (97%), Gaps = 7/441 (1%)
Strand = Plus / Minus
Query: 43 gcttccttaattctgttctga-gtgtttctgccaaatatttttggagaagacaaaagaaa 101
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 636 gcttccttaattctgttctgacgagtttctgccaaatatttttggagaagacaaaagaaa 577
Query: 102 tcacgtgactaaatttaccgtctaatgttcagtcctccaccgctagcccagtaagccaga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcacgtgactaaatttaccgtctaatgttcagtcctccaccgctagcccagtaagccaga 517
Query: 162 gaatggaatgtgatgaattggtaccccaaatgtaacttcggtttaacggtctttgtctag 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 516 gaatggaatgtgatgaattggtaccccaaatgtaacttcggtttaacggtctttg-caag 458
Query: 222 aagcacataatttattatagttacccgaatgctcttcactcttcaattgttccccattga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagcacataatttattatagttacccgaatgctcttcactcttcaattgttccccattga 398
Query: 282 gggagaaaagttgaattagagactgggaaaaaaaaactggccatcaaaaacagtattttg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gggagaaaagttgaattagagactgggaaaaaaaaactggccatcaaaaacagtattttg 338
Query: 342 actttcaatgagatttattatcttatgatggattcagcttttgattcatttctggtactg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actttcaatgagatttattatcttatgatggattcagcttttgattcatttctggtactg 278
Query: 402 tttttctgtcatttgaattgatctgatcaataat---ttcggtttggaaatagtatt-ca 457
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct: 277 tttttctgtcatttgaattgatctgatcaataatatctacggtttggaaatagtattaca 218
Query: 458 gactaatactg-tgtactttt 477
||||||||||| |||||||||
Sbjct: 217 gactaatactgctgtactttt 197
>3x_Contig376
Length = 1802
Score = 315 bits (159), Expect = 8e-86
Identities = 202/213 (94%), Gaps = 3/213 (1%)
Strand = Plus / Plus
Query: 684 aaaccaacctgcctcttttggccaattctacacaacgtatgttacaagagaaattgngtc 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4 aaaccaacctgcctcttttggccaattctacacaacgtatgttacaagagaaattgggtc 63
Query: 744 aagtcactgacatttcttcattgcctgatgaatacgttcaattgg-acacagagtggaaa 802
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 64 aagtcactgacatttctcaattgcctgatgaatacgttcaattggaacacagagtggaaa 123
Query: 803 ctatcaa-ttaatctatgagaattccttggaagtttccaagatctacgaaaatgaaagtt 861
||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct: 124 ctatcaagttaatctatgagaatttcttgaaagttaccaagatctacgaaaatgaaagtt 183
Query: 862 acgattaccc-tcccatgncaaggaatccgtcg 893
|||||||||| ||| ||| ||||||||||||||
Sbjct: 184 acgattacccatccaatgtcaaggaatccgtcg 216
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8649
Number of Sequences: 1807
Number of extensions: 8649
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)