BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1483 0.0
>3x_Contig1652
Length = 14842
Score = 1483 bits (748), Expect = 0.0
Identities = 833/853 (97%), Gaps = 9/853 (1%)
Strand = Plus / Minus
Query: 86 ttaaacctacaaagagaaacagaacgcatttcaatcaacaactggacgaatagaaaagcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 ttaaacctacaaagagaaacagaacgcatttcaatcaacaactggacgaatagaaaagcc 5323
Query: 146 attgaagctttcggtagtgaattagccaagtgcaacggtaatccaaagacttcaaagaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 attgaagctttcggtagtgaattagccaagtgcaacggtaatccaaagacttcaaagaat 5263
Query: 206 cccgaaccggttactgtcagtgacacattcgcagaaatcctaagacaagcagtgatcgca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5262 cccgaaccggttactgtcagtgacacattcgcagaaatcctaagacaagcagtgatcgca 5203
Query: 266 gagagcgagccggtaaaagaagagaccgaagacagcaatgcaaatgcagaaatacagcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5202 gagagcgagccggtaaaagaagagaccgaagacagcaatgcaaatgcagaaatacagcca 5143
Query: 326 aaaactatacaagacgaaaattccgcatgaattgtgtccgcctgtatagaatatatatat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 aaaactatacaagacgaaaattccgcatgaattgtgtccgcctgtatagaatatatatat 5083
Query: 386 atatatgtatatagtttcataacgaaccgattatcaattgtactataaaaccgtcagcca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5082 atatatgtatatagtttcataacgaaccgattatcaattgtactataaaaccgtcagcca 5023
Query: 446 acttcatcattaatcacaaaatacgactctcattaaacttcaactttctttttttcctaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5022 acttcatcattaatcacaaaatacgactctcattaaacttcaactttctttttttcctaa 4963
Query: 506 agtctgaaaagtgtaaaagttaaattcaatcaagatgagctagtttataagtctgaactg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4962 agtctgaaaagtgtaaaagttaaattcaatcaagatgagctagtttataagtctgaactg 4903
Query: 566 agttgaacacagtcgcagagatctttgtctcgcagttctccgttgttttcatactaccct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4902 agttgaacacagtcgcagagatctttgtctcgcagttctccgttgttttcatactaccct 4843
Query: 626 gattacgattctcaagcttaacggatctcgataattgtttcattgtctaacttgtgtaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842 gattacgattctcaagcttaacggatctcgataattgtttcattgtctaacttgtgtaga 4783
Query: 686 gagcaagttattgaaaaagtttaggagagaccgaaaagaggaaatatttaacaatgctnt 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4782 gagcaagttattgaaaaagtttaggagagaccgaaaagaggaaatatttaacaatgcttt 4723
Query: 746 ctagtataagaaccggtaccgtggttctatctcgtactttc-agcagagcttggctagct 804
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4722 ctagtataagaccgggtaccgtggttctatctcgtactttcaagcagagcttggctagct 4663
Query: 805 ataggggtgntactgctgntagtttgnattctacaaataa-tctgcac-aaagtccgatt 862
||||||||| |||||||| ||||||| ||||||||||||| ||||||| |||||||||||
Sbjct: 4662 ataggggtgttactgctgttagtttgtattctacaaataattctgcacaaaagtccgatt 4603
Query: 863 c-accaaagaa--cacattcactnanaggggc-aaagcgttgcccca-aagac-ttagaa 916
| ||||||||| ||||| |||| | | |||| |||||||||| ||| ||||| ||||||
Sbjct: 4602 caaccaaagaaaccacatccactgaaaagggcaaaagcgttgcaccagaagacgttagaa 4543
Query: 917 ctaagagacgtga 929
|||||||||||||
Sbjct: 4542 ctaagagacgtga 4530
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,584
Number of Sequences: 1807
Number of extensions: 10584
Number of successful extensions: 1521
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)