BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB09FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1505 0.0
>3x_Contig1442
Length = 8270
Score = 1505 bits (759), Expect = 0.0
Identities = 840/863 (97%), Gaps = 3/863 (0%)
Strand = Plus / Minus
Query: 88 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 taacaaacgatcgtctccagatcaattgagctataactctttcaccactatgaagaaaaa 5179
Query: 148 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagtgaaaag 5119
Query: 208 aaaaaaacaccaattgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 aaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaaaacaat 5059
Query: 268 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 aaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttacttttacgtatg 4999
Query: 328 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 ttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatgctgaag 4939
Query: 388 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 agggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgtaaagatc 4879
Query: 448 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgctcagtgg 4819
Query: 508 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 ttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtagttggag 4759
Query: 568 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 ggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggtgatgat 4699
Query: 628 ggggtatctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 gggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcgtttgaa 4639
Query: 688 ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 ctcctgtactatttccagtggtgtttgttgagtttgattcttgacaccagtacctatgaa 4579
Query: 748 atttccatgatttcagttggcacagtcttgagcaatattt-gtgcgcttacaccttttac 806
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 4578 attcccatgatttcagttggcacagtcttgagcaatatttggtgcgcttacaccttctac 4519
Query: 807 atttggggaactgttttgggagatcttcccattt-ccacagctgaaattagcacactgcc 865
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 4518 atttggggaactgttttggatgatcttcccatttcccacagctgaaattagcacactgcc 4459
Query: 866 tgacttctgaagccttatgttttctgcacgagtttcttcataccacggaacttcattatt 925
||||| ||| ||||| |||||| |||||||||||||| ||||||||| || || || |
Sbjct: 4458 tgactcctgtagcctcatgtttcctgcacgagtttctcattaccacggagctccagtagt 4399
Query: 926 gcacgaattcgctttaaggagcc 948
|||||| |||| |||||||||||
Sbjct: 4398 gcacgatttcg-tttaaggagcc 4377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6886
Number of Sequences: 1807
Number of extensions: 6886
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)