BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB10FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1584 0.0
>3x_Contig1536
Length = 11572
Score = 1584 bits (799), Expect = 0.0
Identities = 832/844 (98%)
Strand = Plus / Minus
Query: 88 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7257 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 7198
Query: 148 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7197 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 7138
Query: 208 tcgaaaggaacattttttcagcatgactgctatgtttcttcttggaggctttgagactgc 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7137 tcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactgc 7078
Query: 268 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7077 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 7018
Query: 328 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7017 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 6958
Query: 388 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 6898
Query: 448 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6897 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 6838
Query: 508 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 6778
Query: 568 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 6718
Query: 628 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 6658
Query: 688 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 6598
Query: 748 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacganattatgacc 807
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6597 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgacc 6538
Query: 808 ttatttcatggaacaattgtacatcaantgcataaccagtggtcaagcaatccgttacag 867
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6537 ttatttcatggaacaattgtacatcaatgcaataaccagtggtcaagcaatccgttacag 6478
Query: 868 agtgaataggatcgttccaacacaanaaggtatgttcgttacttcctttcttgttgtatg 927
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 6477 agtgaataggatcgttccaacacaagaaggtatgttcgttactttctttcttgttgtatg 6418
Query: 928 tggg 931
||||
Sbjct: 6417 tggg 6414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5212
Number of Sequences: 1807
Number of extensions: 5212
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)