BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB11RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1604 0.0
>3x_Contig1629
Length = 12481
Score = 1604 bits (809), Expect = 0.0
Identities = 841/847 (99%), Gaps = 4/847 (0%)
Strand = Plus / Plus
Query: 61 cataaatttcc-tctcttct-actcacagtactgtcctcattccaatgagaggtttcgtt 118
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 cataaatttccatctcttctcactcacagtactgtcctcattccaatgagaggtttcgtt 3664
Query: 119 catgtcaacagctaatttacgtttcgcttgaattggtgagtcggaattaaacataacagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 catgtcaacagctaatttacgtttcgcttgaattggtgagtcggaattaaacataacagg 3724
Query: 179 aggcgaacttctaacattatgatgcctagaaattgatgaaaacacctgatctaaaggagt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 aggcgaacttctaacattatgatgcctagaaattgatgaaaacacctgatctaaaggagt 3784
Query: 239 tcctggagcagaactagggggatggttaagagatctagtgtcatgaccatcataattact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 tcctggagcagaactagggggatggttaagagatctagtgtcatgaccatcataattact 3844
Query: 299 tggatcatccaaatctgcatcctcatcatcagttttcgaaagtgaaaattcgtcatccct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 tggatcatccaaatctgcatcctcatcatcagttttcgaaagtgaaaattcgtcatccct 3904
Query: 359 cttagattttggtctgatagatttcgaaccagccgaagaaggagaattcatcacaacacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 cttagattttggtctgatagatttcgaaccagccgaagaaggagaattcatcacaacacc 3964
Query: 419 tctatatctccctttttttgtagagccagtagcagaatgtggtggagagatatctgtacc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 tctatatctccctttttttgtagagccagtagcagaatgtggtggagagatatctgtacc 4024
Query: 479 gctacctcttcttttcctttgaggagtcttgaacttagtcggagaatgaccgatacgcat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 gctacctcttcttttcctttgaggagtcttgaacttagtcggagaatgaccgatacgcat 4084
Query: 539 caatggcttattgaaagattgttgagatttttgcatctgtaacgatgtttgagccattgg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 caatggcttattgaaagattgttgagatttttgcatctgtaacgatgtttgagccattgg 4144
Query: 599 ggacttcatagggtcagagtactgttttagaatagcaggtctgccccgtttctttggcgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 ggacttcatagggtcagagtactgttttagaatagcaggtctgccccgtttctttggcgt 4204
Query: 659 tgtaacgttactgttcgtagaaccgtccttgctacacatcttgtagctcgcttttaatag 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4205 tgtaacgttactgttcgtagaaccgtccttgctacacatcttgtagctcgcttttaatag 4264
Query: 719 tgaatctgtactctaggtgtgcggaaaacttttccctttttactgaaagaatccttagag 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4265 tgaatctgtactctaggtgtgcggaaaacttttccctttttactgaaagaatccttagag 4324
Query: 779 gtatttatatgaccacaataagtgtatgctctgtcanaataaatactgtcagctcttctc 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4325 gtatttatatgaccacaataagtgtatgctctgtcaaaataaatactgtcagctcttctc 4384
Query: 839 agtgctttgtatgtgatcgaatgt-accgcaaagaagaa-tatgacttgaacggnacttc 896
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 4385 agtgctttgtatgtgatcgaatgtaaccgcaaagaagaagtatgacttgaacggaacttc 4444
Query: 897 agcaact 903
|||||||
Sbjct: 4445 agcaact 4451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6152
Number of Sequences: 1807
Number of extensions: 6152
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)