BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC04RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1622 0.0
>3x_Contig1043
Length = 5132
Score = 1622 bits (818), Expect = 0.0
Identities = 861/870 (98%), Gaps = 4/870 (0%)
Strand = Plus / Plus
Query: 49 ctactgttattagcaaaggtttagagaaaacagcgtgagctagtgaagtatttgatactt 108
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ctactgttattagcaaaggttgagagaaaacagcgtgagctagtgaagtatttgatactt 1164
Query: 109 ttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtaggcaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtaggcaac 1224
Query: 169 agaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcataaaggat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 agaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcataaaggat 1284
Query: 229 gcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtcaaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtcaaca 1344
Query: 289 agaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagttgccg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagttgccg 1404
Query: 349 ttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccaccaccaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 ttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccaccaccaa 1464
Query: 409 cagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaagggtact 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 cagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaagggtact 1524
Query: 469 ctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccctcctc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccctcctc 1584
Query: 529 ctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatgttac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 ctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatgttac 1644
Query: 589 agtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagtctgg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 agtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagtctgg 1704
Query: 649 taagttctactccaaagagccatattcttacagctattaaaagagtagagattagtttcc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 taagttctactccaaagagccatattcttacagctattaaaagagtagagattagtttcc 1764
Query: 709 ctgagtgtcttttcttccatataccaacctatgaaaataggttagaagaagtaaaccata 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ctgagtgtcttttcttccatataccaacctatgaaaataggttagaagaagtaaaccata 1824
Query: 769 ttcttatcggtgcgctgttggctgtttgctcttatttcagtccattcaaagtccctgatt 828
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1825 ttcttatcggtgcgctgttggctgtttgctcttattccagtccattcaaagtccctgatt 1884
Query: 829 tgaaatcagagttcagttcggaaggataaatgggtatggagtc-atccgttttcaagtga 887
||||||||||||||||||||| ||||||||||| || |||||| || || ||||||||||
Sbjct: 1885 tgaaatcagagttcagttcgg-aggataaatggtta-ggagtcaattcg-tttcaagtga 1941
Query: 888 aacactccctttatgagaagctggctttgg 917
||||||| ||||||||||||||||||||||
Sbjct: 1942 aacactcgctttatgagaagctggctttgg 1971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5726
Number of Sequences: 1807
Number of extensions: 5726
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)