BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC05FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1612 0.0
>3x_Contig1720
Length = 19870
Score = 1612 bits (813), Expect = 0.0
Identities = 844/852 (99%), Gaps = 2/852 (0%)
Strand = Plus / Minus
Query: 87 ttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagacttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590 ttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagacttt 16531
Query: 147 caagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16530 caagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaaaac 16471
Query: 207 ctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16470 ctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaattt 16411
Query: 267 ctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactttct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16410 ctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactttct 16351
Query: 327 cctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcacaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16350 cctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcacaaaa 16291
Query: 387 cagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactttcag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16290 cagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactttcag 16231
Query: 447 attacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaagcta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16230 attacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaagcta 16171
Query: 507 ttgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgatggt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16170 ttgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgatggt 16111
Query: 567 actctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaatgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16110 actctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaatgt 16051
Query: 627 ttgcaattgacgccaagaggaattttggagttcttttcataccatccagctgtaacagat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16050 ttgcaattgacgccaagaggaattttggagttcttttcataccatccagctgtaacagat 15991
Query: 687 gaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgtcaaca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15990 gaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgtcaaca 15931
Query: 747 tggaccgatacgcagacattgtttttgttaaagaagttatgtcaatatggacacaat-aa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 15930 tggaccgatacgcagacattgtttttgttaaagaagttatgtcaatatggacacaataaa 15871
Query: 806 acgtttggataccttaacatcgngagactgccattgcactattcagatgaccgcacgcta 865
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 15870 acgttggaataccttaacatcggaggactgccattgcactattcagatgaccgcacgcta 15811
Query: 866 atcaaaactccgcactattatcagtgccatgattccttacagtttattaag-tgaatttt 924
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 15810 atcaaaactccgcactattatcagtgccatgattccttacagtttataaagttgaatttt 15751
Query: 925 ccagcattgaaa 936
||||||||||||
Sbjct: 15750 ccagcattgaaa 15739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6540
Number of Sequences: 1807
Number of extensions: 6540
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)