BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC05RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig738 1542 0.0
>3x_Contig738
Length = 1897
Score = 1542 bits (778), Expect = 0.0
Identities = 803/810 (99%), Gaps = 1/810 (0%)
Strand = Plus / Plus
Query: 45 gctttaaaaaaaca-ggcagcttctaccaaatcaatgtatttggcggtgtttcccatggg 103
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gctttaaaaaaacaaggcagctactaccaaatcaatgtatttggcggtgtttcccatggg 1147
Query: 104 tttgctgtcagaggtgacttaagcattccagcagtgagatatgctcaagacaaaaccatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 tttgctgtcagaggtgacttaagcattccagcagtgagatatgctcaagacaaaaccatc 1207
Query: 164 gaagaccaaatttcattcttcaaattcttcttcaattgcatctgaaaagcttaactatat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 gaagaccaaatttcattcttcaaattcttcttcaattgcatctgaaaagcttaactatat 1267
Query: 224 atctgttagcttttgcaggatgtaactacattttcctttgatttttgaatgttaaagtta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 atctgttagcttttgcaggatgtaactacattttcctttgatttttgaatgttaaagtta 1327
Query: 284 cgttgtaagtttacatatgtatatttagttcaactattcattgcttccttaattgtttgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 cgttgtaagtttacatatgtatatttagttcaactattcattgcttccttaattgtttgt 1387
Query: 344 ttctccgatggctaatatgcgcaaccacatgtgggaggaagaatgcaaaaaggtgcagat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 ttctccgatggctaatatgcgcaaccacatgtgggaggaagaatgcaaaaaggtgcagat 1447
Query: 404 gttcatagaatgtatatacatcttaattcttaatgatttcttgtcttggaattattatac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 gttcatagaatgtatatacatcttaattcttaatgatttcttgtcttggaattattatac 1507
Query: 464 aattgctcgcgttcttgaataccagagtgtatgtgtaagagcttacaaatacggtacatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 aattgctcgcgttcttgaataccagagtgtatgtgtaagagcttacaaatacggtacatt 1567
Query: 524 gtcagatttattattcgtttgtctggtaaaactgttgtagcttgggttttcgttcaaata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 gtcagatttattattcgtttgtctggtaaaactgttgtagcttgggttttcgttcaaata 1627
Query: 584 tgggttgctaccagagaaaccttgatattgtgtgttagcagagaaggagttttccggttt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 tgggttgctaccagagaaaccttgatattgtgtgttagcagagaaggagttttccggttt 1687
Query: 644 ccttaaatttgtagtgcttggagctgttggaacacggttataactcgtggtattgtcccc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 ccttaaatttgtagtgcttggagctgttggaacacggttataactcgtggtattgtcccc 1747
Query: 704 catgacggcagaacttggctgcaatggttcgtttccgctcgaagagtcaaatcttctaat 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 catgacggcagaacttggctgcaatggttcgtttccgctcgaagagtcaaatcttctaat 1807
Query: 764 acgagatgaagtatcgtatgtggtattagagtcgtcgatatcttcatcaaacaataatct 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1808 acgagatgaagtatcgtatgtggtattagagtcgtcgatatcttcatcaaacaataatct 1867
Query: 824 tgcagaatattttgattgtttcatttcaaa 853
|||||||| |||||| | ||||||||||
Sbjct: 1868 tgcagaattatttgatgttctcatttcaaa 1897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7664
Number of Sequences: 1807
Number of extensions: 7664
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)