BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC06FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig830 1635 0.0
>3x_Contig830
Length = 3109
Score = 1635 bits (825), Expect = 0.0
Identities = 863/872 (98%), Gaps = 3/872 (0%)
Strand = Plus / Plus
Query: 87 cggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgtcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 cggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgtcat 85
Query: 147 tcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaagaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaagaagg 145
Query: 207 ctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagattcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagattcca 205
Query: 267 ttaaaccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcagatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttaaaccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcagatt 265
Query: 327 ataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatattaccg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatattaccg 325
Query: 387 gtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaagaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaagaac 385
Query: 447 agaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcaggtgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcaggtgg 445
Query: 507 aatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacgagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacgagg 505
Query: 567 acgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatcccaagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatcccaagt 565
Query: 627 tttccaatctgtattactatgatggcagcgaccaacccttaactttaagcacatctttac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttccaatctgtattactatgatggcagcgaccaacccttaactttaagcacatctttac 625
Query: 687 cgttagtgttaagcgaagagaagcgtaagagggaagagcgtaagcaattaaaacagcggg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cgttagtgttaagcgaagagaagcgtaagagggaagagcgtaagcaattaaaacagcggg 685
Query: 747 aaaggcaggagaggttgaaaagaagaatgacttccaagaagtctaaacgtgaacattctg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaggcaggagaggttgaaaagaagaatgacttccaagaagtctaaacgtgaacattctg 745
Query: 807 ctactccagatcttgcagaagatgagtacgtattttggttatttttcc-aagcgatgacg 865
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 746 ctactccagatcttgcagaagatgagtacgtatttgggttatttttccaaagcgatgacg 805
Query: 866 agaaacctaaagttacc-atgacctttnatctcctttgcgtaggctcattaccgtggcag 924
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 806 agaaacctaaagttaccaatgaccttgaatctcctttgcgtaggctcagtaccgtggcag 865
Query: 925 tatctgatatagagc-ttcttctggagatgaa 955
||||||||| ||||| ||| ||||||||||||
Sbjct: 866 tatctgataaagagctttcatctggagatgaa 897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7382
Number of Sequences: 1807
Number of extensions: 7382
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)