BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC11FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig362 722 0.0
>3x_Contig362
Length = 1532
Score = 722 bits (364), Expect = 0.0
Identities = 377/380 (99%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 86 cttgttcggattctatgacaagaagcaaaagggaaaatcgaagaagaagaatattttgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttgttcggattctatgacaagaagcaaaagggaaaatcgaagaagaagaatattttgtc 323
Query: 146 caaagagtactggatgaaggatgagagtgcaaaagaatgtttcaactgtgctaagc-cat 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 caaagagtactggatgaaggatgagagtgcaaaagaatgtttcaactgtgctaagcgcat 263
Query: 205 ttacaacctttagaagattacatcattgtcgaatttgcggacaaattttctgcagtagct 264
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttacaacctttagaagaaaacatcattgtcgaatttgcggacaaattttctgcagtagct 203
Query: 265 gtagtttcctaataactggtgagagctttggttatagtggacgaatgagaatatgtggca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtagtttcctaataactggtgagagctttggttatagtggacgaatgagaatatgtggca 143
Query: 325 agtgctacgaacactctatgaactacgaggattccagtgaggaagagtcagaagaagaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agtgctacgaacactctatgaactacgaggattccagtgaggaagagtcagaagaagaaa 83
Query: 385 tcattcatgatcaagtaagcagtagaaacattgatgatgatgccccatctttaaacaacg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tcattcatgatcaagtaagcagtagaaacattgatgatgatgccccatctttaaacaacg 23
Query: 445 atgacatacaaagtatcctt 464
||||||||||||||||||||
Sbjct: 22 atgacatacaaagtatcctt 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7650
Number of Sequences: 1807
Number of extensions: 7650
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)