BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1533 1554 0.0
>3x_Contig1533
Length = 11082
Score = 1554 bits (784), Expect = 0.0
Identities = 796/800 (99%)
Strand = Plus / Plus
Query: 48 caatcgtcaggttcaattgttgtttagttcgttggtgaattaattggagaggtttcatta 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8681 caatcgtcaggttcaattgctgtttagttcgttggtgaattaattggagaggtttcatta 8740
Query: 108 ctgaagctggtaattacatttttttcatttaacttcactagagaaagaggccgcaaaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8741 ctgaagctggtaattacatttttttcatttaacttcactagagaaagaggccgcaaaaga 8800
Query: 168 accaaccattttattgcaggcacatcatttgggatgactaccgacgttgcacctggcact 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8801 accaaccattttattgcaggcacatcatttgggatgactaccgacgttgcacctggcact 8860
Query: 228 atggaaaatgagacatctaaggtgatgtctttgaagcataaagctgcgtatgtgccaccg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8861 atggaaaatgagacatctaaggtgatgtctttgaagcataaagctgcgtatgtgccaccg 8920
Query: 288 cccatcccacacgttgaaatgaatcagcttccgttgtccttattgctacgaaacttgaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8921 cccatcccacacgttgaaatgaatcagcttccgttgtccttattgctacgaaacttgaca 8980
Query: 348 gtatttaccgccaaagagataagtcagtttttcaagctaaacgtccacacaggtgggaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8981 gtatttaccgccaaagagataagtcagtttttcaagctaaacgtccacacaggtgggaaa 9040
Query: 408 acaccatttgagaagaaactagagctacttaatatgatcctttttttgagaaaccaattc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9041 acaccatttgagaagaaactagagctacttaatatgatcctttttttgagaaaccaattc 9100
Query: 468 ttgaaactttacgtcttggttaaatgggcaaagactttaaaacagaataatttccattcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9101 ttgaaactttacgtcttggttaaatgggcaaagactttaaaacagaataatttccattcg 9160
Query: 528 ctaattgatcttttgaattggtttagaaatgctaacatgcaagtaaacaactgtactatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9161 ctaattgatcttttgaattggtttagaaatgctaacatgcaagtaaacaactgtactatg 9220
Query: 588 gctttgaagcaaatcttaggaacgatggctggagcaaagttacccaatccagatctagcc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9221 gctttgaagcaaatcttaggaacgatggctggagcaaagttacccaatccagatctagcc 9280
Query: 648 acatcgttagaagttttaatgcttggaagaccgaatttgccgaatcacggatttaattta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9281 acatcgttagaagttttaatgcttggaagaccgaatttgccgaatcacggatttaattta 9340
Query: 708 aacggtagccaatccgataacttgacaatacctaacaaactgatactcaagagattgagg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9341 aacggtagccaatccgataacttgacaatacctaacaaactgatactcaagagattgagg 9400
Query: 768 gacctaaacacatgtttatcaattaagatttcattgatgtacattccttctcaattggca 827
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9401 gacctaaacacatgtttatcaattaagatttcattgatgacaattccttctcaattggca 9460
Query: 828 aagtatgaaatcaaagacgg 847
||||||||||||||||||||
Sbjct: 9461 aagtatgaaatcaaagacgg 9480
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)