BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZC12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1622 0.0
>3x_Contig1708
Length = 19451
Score = 1622 bits (818), Expect = 0.0
Identities = 857/867 (98%), Gaps = 3/867 (0%)
Strand = Plus / Plus
Query: 85 ttgattggatacttaccgagtaatttgaagagacaagaacaggtattgaaccgtaaaaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15855 ttgattggatacttaccgagtaatttgaagagacaagaacaggtattgaaccgtaaaaga 15914
Query: 145 ctggaatataagcagggtgtagatcatatcttttccgataaccatgagaaagatgtaaca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15915 ctggaatataagcagggtgtagatcatatcttttccgataaccatgagaaagatgtaaca 15974
Query: 205 acttggcatcatattgaatttgacataccgagaaccaacccacatattccattgtaccaa 264
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15975 acttggcatcaaattgaaattgacataccgagaaccaacccacatattccattgtaccaa 16034
Query: 265 ttcgaatcagttcataattcattgaaacggatattgtatttttgggccataagacatcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16035 ttcgaatcagttcataattcattgaaacggatattgtatttttgggccataagacatcct 16094
Query: 325 gccagtggttacgtacaggggatcaacgatctagtgacaccttttttccaagtgtttttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16095 gccagtggttacgtacaggggatcaacgatctagtgacaccttttttccaagtgtttttg 16154
Query: 385 tccgaatacctttcaccatcggcaaaggatgacgtttacagtttagatccgctgacgtat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155 tccgaatacctttcaccatcggcaaaggatgacgtttacagtttagatccgctgacgtat 16214
Query: 445 ttgactgcagagcagttgtctgatgtagaagcggattgtttctggtgtctatccaaactc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16215 ttgactgcagagcagttgtctgatgtagaagcggattgtttctggtgtctatccaaactc 16274
Query: 505 ttggaacaaatcacagattatttcatccatggtcagcctggaatattgaaacaagtcaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16275 ttggaacaaatcacagattatttcatccatggtcagcctggaatattgaaacaagtcaaa 16334
Query: 565 cacctcagtcagttggtgaaaagaatagattgtgatttattcagccatttcgaatctgag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16335 cacctcagtcagttggtgaaaagaatagattgtgatttattcagccatttcgaatctgag 16394
Query: 625 cacgttgaattcttacaatttagtgtcagatggatgaactgtttgttgatgagagagttc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395 cacgttgaattcttacaatttagtgtcagatggatgaactgtttgttgatgagagagttc 16454
Query: 685 caaatgtcaatggtgatacgaatgtgggatacatacctctccgagacttctttggagaca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16455 caaatgtcaatggtgatacgaatgtgggatacatacctctccgagacttctttggagaca 16514
Query: 745 agcatagtctcagaggatctcatgtctgacgcatcgacttctctggatagaaagtcgaga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16515 agcatagtctcagaggatctcatgtctgacgcatcgacttctctggatagaaagtcgaga 16574
Query: 805 acatcgtcatcagggccctcatcttcagacttccagac-aactactctcagtgaatttca 863
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 16575 acatcgtcatcagggccctcatcttcagac-tccagacaaactactctcagtgaatttca 16633
Query: 864 tgtttttcgtttgtgcagctttcctagtgaaatggtcagacgaattattgagnatggact 923
|| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 16634 tg-ttttcgtttgtgcagctttcctagtgaaatggtcagacgaattaatgaagatggact 16692
Query: 924 tncaanagataattacattcttacaaa 950
| ||| |||||||||||||||||||||
Sbjct: 16693 tccaagagataattacattcttacaaa 16719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6191
Number of Sequences: 1807
Number of extensions: 6191
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)