BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD01FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1566 0.0
>3x_Contig1676
Length = 15800
Score = 1566 bits (790), Expect = 0.0
Identities = 853/869 (98%), Gaps = 4/869 (0%)
Strand = Plus / Minus
Query: 86 ataaattgcagaggagatagtttgaaaacttcagaaactgtctgagggaattgtagttca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5465 ataaattgcagaggagatagtttgaaaacttcagaaactgtctgagggaattgtagttca 5406
Query: 146 ttcgagtctaacaattcgatatttccttccgtatctttcgtgatacttctgaaggtaaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 ttcgagtctaacaattcgatatttccttccgtatctttcgtgatacttctgaaggtaaca 5346
Query: 206 gtagaagctttcttcagagccttttcagctttgacattttgagcctttctttctaaattc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5345 gtagaagctttcttcagagccttttcagctttgacattttgagcctttctttctaaattc 5286
Query: 266 atcatatccttccacacagtgtttctttcccacacaacgtgttctctcaaatgaagggaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285 atcatatccttccacacagtgtttctttcccacacaacgtgttctctcaaatgaagggaa 5226
Query: 326 agctctctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5225 agctctctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaata 5166
Query: 386 gcttttgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5165 gcttttgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgt 5106
Query: 446 tcattgaacacatgcgatttctttgataaactctttaaataatcggtcttgatattacta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5105 tcattgaacacatgcgatttctttgataaactctttaaataatcggtcttgatattacta 5046
Query: 506 tccaaagatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 tccaaagatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgata 4986
Query: 566 aaagattttaattctgaaagttgagtgaaacaggcaacgattctcttctt-aaagtaatc 624
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4985 aaagattttaattctgaaagttgagtgaaacaggcaacgattctcttcttcaaagtaatc 4926
Query: 625 tgttgttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 tgttgttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagt 4866
Query: 685 atttcactggtaatggaatgcatgagcctagatcctactgaaccagttcttgctcttcga 744
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 4865 atttcactggtaatggaatgcatgagcctagatcctactgaaccagttcgtattcttcga 4806
Query: 745 gcctggatctgcttattctgaccatcagactgctncttggtttccaatggaaaacccgtc 804
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4805 gcctggatctgcttattctgaccatcagactgct-cttggtttccaatggaaaacccgtc 4747
Query: 805 ctcgtcatcgncttcctcagaattaagatccatttcttgctttgaattgtattcagagat 864
|||||||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 4746 ctcgtcatcgtcttcctcagaataaagatccatttctggctgtgaattgtattcagagat 4687
Query: 865 agaaga-gatcgcctttgttccctgtctgttcaaatcaccagggcttggattatgaatcg 923
|||||| ||||||| |||||||||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 4686 agaagatgatcgcc-ttgttccctgtctgttcagatcaccagtgcttgtattatgtatcg 4628
Query: 924 atctgttcatcagttcattcttgaacgta 952
||||||||||||||||||||| |||||||
Sbjct: 4627 atctgttcatcagttcattctggaacgta 4599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7279
Number of Sequences: 1807
Number of extensions: 7279
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)