BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD01RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1545 327 2e-89
3x_Contig806 123 7e-28
>3x_Contig1545
Length = 12118
Score = 327 bits (165), Expect = 2e-89
Identities = 269/292 (92%), Gaps = 9/292 (3%)
Strand = Plus / Plus
Query: 592 gtgcacagttttattactgaaaaatccttggcaagaagatctgaccgatgagagatggtg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcacagttttattactgaaaaatccttggcaagaagatctgaccgatgagagatggtg 60
Query: 652 atatctttttctctaattgcttcaattgaatttctccaaatctggccatcatgctgtttt 711
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 61 atatc-ttttctctaattgcttcaattgaatttctccaaatctggccatcatgctg-ttt 118
Query: 712 tgtgaattattaataactttgncttaaatgagtcaaatgttcttttagtttttgtgactt 771
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 119 tgtgaattattaataac-ttgtcttaaatgagtcaaatgttcttttag-ttttgtgac-t 175
Query: 772 tctggagcatatttctcattcaaatgttata-tacccccaataccttaatgcaagttctt 830
|||||||||||| ||||| |||||| |||| |||| |||||||| |||||||||| |
Sbjct: 176 tctggagcatatctctca-tcaaatagtatagtaccaccaataccataatgcaagtac-g 233
Query: 831 tcaagataaaaaagaaccatggcgaaattaaaatttggctcctcttcatttg 882
|||| | |||||||| || |||||| ||||||||||||||||||||||||
Sbjct: 234 tcaaagtcaaaaagaaacaatgcgaaa-taaaatttggctcctcttcatttg 284
>3x_Contig806
Length = 2480
Score = 123 bits (62), Expect = 7e-28
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 45 caagaattattgagatactgttacgggcattaaatttatcgtaaaactgtgatgaagaac 104
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 81 caagaattattgagatacctgtacgggcattaaatttatcgtaaaactgtgatgaagaac 22
Query: 105 ctgtcttttcaaca 118
||||||||||||||
Sbjct: 21 ctgtcttttcaaca 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7588
Number of Sequences: 1807
Number of extensions: 7588
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)