BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD03FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1060 1665 0.0
>3x_Contig1060
Length = 4482
Score = 1665 bits (840), Expect = 0.0
Identities = 883/896 (98%), Gaps = 1/896 (0%)
Strand = Plus / Plus
Query: 86 atgaatattattgtacgaaatgtacatcttgctagtatcagctccagaatcttcctgaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgaatattattgtacgaaatgtacatcttgctagtatcagctccagaatcttcctgaga 657
Query: 146 catctttaaatttcagataggctatcgacaatttgggtggttcgtatagcgcttgtcact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catctttaaatttcagataggctatcgacaatttgggtggttcgtatagcgcttgtcact 717
Query: 206 aactatattagcgaaatgcaatgatacgaatacgcgaggtgataactcaatggtaattcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aactatattagcgaaatgcaatgatacgaatacgcgaggtgataactcaatggtaattcg 777
Query: 266 gctgaagatgagataccagttcttaaaaagatgcgatgagctttaaaacttttcgaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gctgaagatgagataccagttcttaaaaagatgcgatgagctttaaaacttttcgaaaaa 837
Query: 326 aaaaaaaagaaatcttgttatctgagatcagcaaagattcccatgtgatgagataagcta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaaaaaaagaaatcttgttatctgagatcagcaaagattcccatgtgatgagataagcta 897
Query: 386 caacacagccagttgtagcataaggatttagaacgttattcgcataggaatagtgtaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 caacacagccagttgtagcataaggatttagaacgttattcgcataggaatagtgtaaat 957
Query: 446 agcggctctaataagcgaggggaaagtaaaggtatttgtatttccgcaattcttatatgg 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 958 agcggctctaataagcgaggggaaagtaaaggtatttgtatttccgcaattctttgatgg 1017
Query: 506 tttttctggatggaattaggatctatatatgcggtactagttataatgaaatacgtagta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tttttctggatggaattaggatctatatatgcggtactagttataatgaaatacgtagta 1077
Query: 566 ttggtatcaacggttattattcggaagcgtcattcaaatcatcagcttctccattttcat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 ttggtatcaacggttattattcggaagcgtcattcaaatcatcagcttctccattttcat 1137
Query: 626 atacgaattcttgttcgtcttcctgttctctgtcttgtatttcattaacgtctttgccat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 atacgaattcttgttcgtcttcctgttctctgtcttgtatttcattaacgtctttgccat 1197
Query: 686 tgatttgcatggatgctaattgttttctcaagaaagattgtccggaaagcatttctaatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 tgatttgcatggatgctaattgttttctcaagaaagattgtccggaaagcatttctaatt 1257
Query: 746 taccttgaatggaaaggagagttgagagagactccgagctggtccttaaggacgaccttt 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 taccttgaatggaaaggagagttgagagagactccgagctggtccttaaggacgacctta 1317
Query: 806 agcgttttgtcattttgtttggtgttgaattgataaccttgatttgagatctacgaagag 865
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1318 ggcgttttgtcattttgtttgtgtttgaattgataaccttgatttgagatctacgaagag 1377
Query: 866 tttttagccatttgagccatacagaggcttggcctgcttaatcaacatttgctgatatat 925
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1378 ttaatagccatttgagccatacagaggcttggcctgctgaatcaacatttgctgatatat 1437
Query: 926 gttgcgcaagcactccaaac-acttattagtactgtctttgttaagatcatctctg 980
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 1438 gttgcgcaagcacttcaaacaacttattagtactgtcttcgttaagatcatctctg 1493
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,488
Number of Sequences: 1807
Number of extensions: 14488
Number of successful extensions: 214
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)