BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig301 735 0.0
3x_Contig1180 129 1e-29
>3x_Contig301
Length = 1492
Score = 735 bits (371), Expect = 0.0
Identities = 421/431 (97%), Gaps = 5/431 (1%)
Strand = Plus / Plus
Query: 43 gcttgtcgtctgcaaagtcagttatgaatgagctaaatcaaaaaaaaacaacagaccata 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gcttgtcgtctgcaaagtcagtaatgaatgagctaaatcaaaaaaaaacaacagaccata 1125
Query: 103 caaaggctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 caaaggctacggatagcaaaactgtgtccacagcatcggaatcagagtcacgtcctccac 1185
Query: 163 agaaaagaaacctggaaacaatgctactgaatagaatgaggcaggtgaagaaaaattttt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1186 agaaaagaaacctggaaacaatgctactgaatagaatgaggcaggtgaagaaaaaatctt 1245
Query: 223 ggaatgaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacata 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 ggaatgaagttccaacgaatacagtcgtcgatctggcatatgatactgttcctgaacata 1305
Query: 283 ccttatcacaggaaaattaacttaataaacctacatagcattttacatactaattaatct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 ccttatcacaggaaaattaacttaataaacctacatagcattttacatactaattaatct 1365
Query: 343 ttacattacaaacatcattactcgtattcacttttaagcaccaccgatattccattgaaa 402
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1366 ttacattacaaacatcattactcgtattcacttttaagcaccaccgatattccattgata 1425
Query: 403 ctttcctgataggaagttaccgacgtttgttgagacatcgctcatgaaattatcattact 462
|||| |||||||| ||||||||||||||||||||| | ||||||||||| ||||| ||||
Sbjct: 1426 cttt-ctgatagg-agttaccgacgtttgttgaga-aacgctcatgaaa-tatca-tact 1480
Query: 463 tctttgagtgt 473
|||||||||||
Sbjct: 1481 tctttgagtgt 1491
>3x_Contig1180
Length = 4625
Score = 129 bits (65), Expect = 1e-29
Identities = 108/117 (92%), Gaps = 4/117 (3%)
Strand = Plus / Minus
Query: 826 gttacttgcaatgcggntgtatatttccttcaaaatatcaaatgttacttcaatattttt 885
||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4616 gttacttgcaatgtgg-tgtataattccttcaaaatatcaaatgttacttcaatattttt 4558
Query: 886 tcttcattttcggattaggatcaagtaattttctccacgatttccattagggttagc 942
| ||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct: 4557 gc-tcaatttcggattaagatcaagtaa-tttctccacgatttcca-tagggttagc 4504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8196
Number of Sequences: 1807
Number of extensions: 8196
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)