BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD04FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1128 1635 0.0
>3x_Contig1128
Length = 4759
Score = 1635 bits (825), Expect = 0.0
Identities = 849/856 (99%), Gaps = 1/856 (0%)
Strand = Plus / Minus
Query: 86 tgtaccgtgaagatatgactgcttctgaattggcagatgctatctctgatgtcaaggact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4411 tgtaccgtgaagatatgactgcttctgaattggcagatgctatctctgatgtcaaggact 4352
Query: 146 acattaaagacatcaaggattccgatggtaactcttacagtggcaagcaagtcggtactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4351 acattaaagacatcaaggattccgatggtaactcttacagtggcaagcaagtcggtactg 4292
Query: 206 ttgactcatggaacgttttggtcgatggtggatctgctaccgccattcaagctgctgact 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4291 ttgactcatggaacgttttggtcgatggtggatctgctaccgccattcaagctgctgact 4232
Query: 266 ttgtcatggcgaacgccttctcttactggcaaggtcaaactatggataatgcttcttact 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4231 ttgtcatggcgaacgccttctcttactggcaaggtcaaactatggataatgcttcttact 4172
Query: 326 cgttcttcgacgatatcatgcaagctctacaaactatccaaactaccaagggttctactg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171 cgttcttcgacgatatcatgcaagctctacaaactatccaaactaccaagggttctactg 4112
Query: 386 acattcaattctgggttggtgaaactggctggccaaccgatggtaccaactttgaaagtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4111 acattcaattctgggttggtgaaactggctggccaaccgatggtaccaactttgaaagtg 4052
Query: 446 cttacccaggtctagataacgctaagcaattttgggctgatggtatttgtgctatgagag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4051 cttacccaggtctagataacgctaagcaattttgggctgatggtatttgtgctatgagag 3992
Query: 506 gctggggtgtcaacgttatcgttttcgaagctttcgatgaggactggaaaccagatactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3991 gctggggtgtcaacgttatcgttttcgaagctttcgatgaggactggaaaccagatactt 3932
Query: 566 ctggtatttccgatgttgaaaagtactggggtgtttgggatgccaacagaaacttgaagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3931 ctggtatttccgatgttgaaaagtactggggtgtttgggatgccaacagaaacttgaagt 3872
Query: 626 tcaagttggattgtgatttcagctcttaatttttgagttgagcttctcttctctttaaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3871 tcaagttggattgtgatttcagctcttaatttttgagttgagcttctcttctctttaaca 3812
Query: 686 tacaatacagattgtgtgtattttttttacccttccactttctcatttgataccggttat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3811 tacaatacagattgtgtgtattttttttacccttccactttctcatttgataccggttat 3752
Query: 746 aattgttgacttgttgtttcctttcgtctcctattaacaactcaaaattatacaaatgaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3751 aattgttgacttgttgtttcctttcgtctcctattaacaactcaaaattatacaaatgaa 3692
Query: 806 gctttcatgtcacatttangtcacacattcctttagcaaattgattcattcatacttgtt 865
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 3691 gctttcatgtcacatttaggtcacacattccttcagcaaattgatccattcatacttgtt 3632
Query: 866 actaacgctgttatctaaa-gtgatattaacttattacctacttgaattcttcaaattgc 924
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3631 actacggctgttatctaaaggtgatattaacttattacctacttgaattcttcaaattgc 3572
Query: 925 gatactattcatttta 940
|||||||| |||||||
Sbjct: 3571 gatactatccatttta 3556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6577
Number of Sequences: 1807
Number of extensions: 6577
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)