BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD04RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1043 1620 0.0
>3x_Contig1043
Length = 5132
Score = 1620 bits (817), Expect = 0.0
Identities = 856/865 (98%), Gaps = 3/865 (0%)
Strand = Plus / Plus
Query: 49 gcttctactgttattagcaaaggttgagagaaaacagcgtgagctagtgaagtatttgat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 gcttctactgttattagcaaaggttgagagaaaacagcgtgagctagtgaagtatttgat 1160
Query: 109 acttttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtagg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 acttttagttggttcgattatactattatgaggtgtgttttggcttgtagtaggtgtagg 1220
Query: 169 caacagaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcataaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 caacagaagataagatgcattcatgatggtaagcctccatgtacgtattgtctgcataaa 1280
Query: 229 ggatgcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 ggatgcggtgatgagtgtgttttgacctatcctccactgaagactaataagagtaaggtc 1340
Query: 289 aacaagaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 aacaagaggaaggctaacaaacccctgggtaataacagaaatggtgatatgtcaggagtt 1400
Query: 349 gccgttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccacca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 gccgttgcagctgcggagacacctgtctctgcagcagtagcaccaccaccaccaccacca 1460
Query: 409 ccaacagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaaggg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 ccaacagtgacaacgaataatttaatcccaaatggagagctgccgcataatcagcaaggg 1520
Query: 469 tactctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tactctcaggaacgccgtcctgatgctgttttaactaatcgaaatttgaacgttgtccct 1580
Query: 529 cctcctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 cctcctccgatggatgctattttttcaccgggtgtgataccgactatcaataacgaaatg 1640
Query: 589 ttacagtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ttacagtaccagtctctcaagaacaacgtgcgcgctccactattctcatctattcaaagt 1700
Query: 649 ctggtaagttctactccaaagagccatattcttacagctattaaaagagtagagattagt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 ctggtaagttctactccaaagagccatattcttacagctattaaaagagtagagattagt 1760
Query: 709 ttccctgagtgtcttttcttccatataccaacctatgaaaataggttagaagaagtaaac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 ttccctgagtgtcttttcttccatataccaacctatgaaaataggttagaagaagtaaac 1820
Query: 769 catattcttattcgtgcgctgttggctgtttgctctta-tccagtcctttc-aagtccct 826
||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 1821 catattcttatcggtgcgctgttggctgtttgctcttattccagtccattcaaagtccct 1880
Query: 827 gattttgaatcagagttcagttcggaggattaatggttagggagtcaattcgtttcaagt 886
||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1881 gatttgaaatcagagttcagttcggaggataaatggtta-ggagtcaattcgtttcaagt 1939
Query: 887 gaaacactcgctttatgagaagctg 911
|||||||||||||||||||||||||
Sbjct: 1940 gaaacactcgctttatgagaagctg 1964
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5746
Number of Sequences: 1807
Number of extensions: 5746
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)