BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD05RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1036 1671 0.0
>3x_Contig1036
Length = 2982
Score = 1671 bits (843), Expect = 0.0
Identities = 871/881 (98%)
Strand = Plus / Plus
Query: 49 gctttgcataaacaggtactacctttcatgctcagaagattgaaggaagaagtgttgtct 108
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 228 gctttgcataaacaggtactaccattcatgctcagaagattgaaggaagaagtgttgtct 287
Query: 109 gatcttccaccaaagatcattcaagattattactgtgaactaagtgatttgcagaaacaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gatcttccaccaaagatcattcaagattattactgtgaactaagtgatttgcagaaacaa 347
Query: 169 ttgtacaatgacttcgtcaagaaacagaagaacgtggtagaaaaagacatcgatttttct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 348 ttgtacaatgacttcgtcaagaaacagaagaacgtggtagaaaaagacatcgaaaatact 407
Query: 229 gctgaagtcgaaaataaacaacatattttccaggctctccaatatatgagaaagctatgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gctgaagtcgaaaataaacaacatattttccaggctctccaatatatgagaaagctatgt 467
Query: 289 aaccatccgtcattggttttgaattcttcgcatcctcaattccaacaagttcaaagctac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaccatccgtcattggttttgaattcttcgcatcctcaattccaacaagttcaaagctac 527
Query: 349 ctttctcagactggaatggatctccacgacataggacacgctcctaaattagaagctcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctttctcagactggaatggatctccacgacataggacacgctcctaaattagaagctcta 587
Query: 409 aagactttgttactagaatgtggtattggcatccaggacgttgaaaagaagtccaacaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aagactttgttactagaatgtggtattggcatccaggacgttgaaaagaagtccaacaaa 647
Query: 469 aatccctccattgataacgtcattagtcaacatcgtgttttaattttctgtcagttaaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aatccctccattgataacgtcattagtcaacatcgtgttttaattttctgtcagttaaag 707
Query: 529 gatatgttagacatggtagaaaacgatttgttaaaaaagcacttaccgtcagtaactttt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gatatgttagacatggtagaaaacgatttgttaaaaaagcacttaccgtcagtaactttt 767
Query: 589 atgcgtttagatggtagcgtcgactccagagatagacaaaaggtggttcgtaagttcaac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgcgtttagatggtagcgtcgactccagagatagacaaaaggtggttcgtaagttcaac 827
Query: 649 gaggatccatctatcgattgtctactattaaccactaaagtcggtgggttagggttgaat 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaggatccatctatcgattgtctactattaaccactaaagtcggtgggttagggttgaat 887
Query: 709 ctaactggtgcagatactgtcatttttgtcgaacacgattggaacccaatgaatgatcta 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ctaactggtgcagatactgtcatttttgtcgaacacgattggaacccaatgaatgatcta 947
Query: 769 caggcaatggaccgtgcacatagattgngtcaaaagaaagtcgtcaatgtctatagaata 828
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 948 caggcaatggaccgtgcacatagattgggtcaaaagaaagtcgtcaatgtctatagaata 1007
Query: 829 atcactaagggcactttggaagagaaaatcatgggtctancaaaattcaaaatgaatatt 888
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1008 atcactaagggcactttggaagagaaaatcatgggtctacaaaaattcaaaatgaatatt 1067
Query: 889 gcatctaccatcgtcaatcaacaaaatgcagctttaggatc 929
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1068 gcatctaccatcgtcaatcaacaaaatgcaggcttaggatc 1108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7054
Number of Sequences: 1807
Number of extensions: 7054
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)