BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZD06RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1516 0.0
>3x_Contig1770
Length = 29267
Score = 1516 bits (765), Expect = 0.0
Identities = 860/883 (97%), Gaps = 7/883 (0%)
Strand = Plus / Plus
Query: 42 gctttctttaggtgcgactgcatttgcgttgca-ggtgggtcacttttcggattattcca 100
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 21520 gctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattcca 21579
Query: 101 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21580 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 21639
Query: 161 ctcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttttaaga 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21640 ctcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaaga 21699
Query: 221 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21700 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 21759
Query: 281 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21760 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 21819
Query: 341 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21820 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 21879
Query: 401 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21880 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 21939
Query: 461 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21940 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 21999
Query: 521 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22000 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 22059
Query: 581 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22060 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 22119
Query: 641 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22120 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 22179
Query: 701 cccatataccagactcacggaattattcaatgtaaacaattntattgttttcttagcaag 760
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 22180 cccatataccagactcacggaattattcaatgtaaacaattttattgtttccttagcaag 22239
Query: 761 accctatttggcaccattagcatttgacgacttnaaacacgatattagaacgtctgagta 820
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 22240 accctatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagta 22299
Query: 821 ctattacttacagaagtttcccataccatcgatcccagaatcttattcaccaatgcaact 880
||||||| |||| || |||||||| ||||||| |||| ||| ||||||||||||||||
Sbjct: 22300 ctattac-tacaagaggttcccata-catcgat-ccaggatcatattcaccaatgcaac- 22355
Query: 881 tatccaaagtttacaaattggnaaccatttagcattcaaattt 923
||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct: 22356 tatccaaggttaccaaattgg-aacca-ttagcattcaaattt 22396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6308
Number of Sequences: 1807
Number of extensions: 6308
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)