BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC15ZD11FM1.SCF screened BAC_end
         (967 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig953                                                         1528   0.0  

>3x_Contig953 
          Length = 3904

 Score = 1528 bits (771), Expect = 0.0
 Identities = 808/817 (98%), Gaps = 3/817 (0%)
 Strand = Plus / Plus

                                                                       
Query: 152 tgtgttcacgtgactcgttcagattaatctaggccacttggaaactaatcctcgaagttc 211
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1   tgtgttcacgtgactcgttcagattaatctagcccacttggaaactaatcctcgaagttc 60

                                                                       
Query: 212 aatgatagcctactagcacgttttaattaccttttaccgctgtaaacaccatttgtttat 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgatagcctactagcacgttttaattaccttttaccgctgtaaacaccatttgtttat 120

                                                                       
Query: 272 ggcaccgagtattatctctttaactgatatcctgggcggttattggcgtttgtttttctg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcaccgagtattatctctttaactgatatcctgggcggttattggcgtttgtttttctg 180

                                                                       
Query: 332 ttttcaaaacacgtaaatatccaataaaaacgactatttaatatagactggtttcaaaga 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttcaaaacacgtaaatatccaataaaaacgactatttaatatagactggtttcaaaga 240

                                                                       
Query: 392 tggatacgaaccacattcaagtccatgaccaacaacaggtgaaagcagtcatttgcagta 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggatacgaaccacattcaagtccatgaccaacaacaggtgaaagcagtcatttgcagta 300

                                                                       
Query: 452 catcgaatactgttcaaggtaccgtgagaggtgtttcctgattttacttggtgctttact 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catcgaatactgttcaaggtaccgtgagaggtgtttcctgattttacttggtgctttact 360

                                                                       
Query: 512 tccatattttttactctgatttaaagagaagggagacatggatagatccagattgtacaa 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccatattttttactctgatttaaagagaagggagacatggatagatccagattgtacaa 420

                                                                       
Query: 572 caaaagtattcgcgaagcgtatgaaaatatggtgaagggagccggagctccgcacttaag 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaaagtattcgcgaagcgtatgaaaatatggtgaagggagccggagctccgcacttaag 480

                                                                       
Query: 632 cgctgatcatgataattccaaggttagcagatattctgcaagtataattcatgaggataa 691
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctgatcatgataattccaaggttagcagatattctgcaagtataattcatgaggataa 540

                                                                       
Query: 692 tcggcgagaaggattggaaaatagtgagtttttagacaacgagtcattgaatgaatatga 751
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 541 tcggcgagaaggattggaaaatagtgagttttcagacaacgagtcattgaatgaatatga 600

                                                                       
Query: 752 tgatgaaggggaagaaaatgatgcggatgacgatggtgaagcagagaacgattatacccc 811
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 601 tgatgaaggggaagaaaatgatgcggatgacgatggtgaagcagagaacgattatacaca 660

                                                                       
Query: 812 atttaagaagtcattaattcaagatgatgagtggcttgatgatgaatcgnatacggacta 871
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 661 atttaagaagtcattaattcaagatgatgagtggcttgatgatgaatcggatacggacta 720

                                                                       
Query: 872 tacagaaggaggccgatcagagctttttactgnagaaggacaattgat-atgatagtgac 930
           ||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct: 721 tacagaa-gaggccgatcagagctttttactggagaaggacaa-tgataatgatagtgac 778

                                                
Query: 931 gatgaaagtcgtcgctacgtgtgcccaggttctgaat 967
           |||||||||||||||||||||||||||||||||||||
Sbjct: 779 gatgaaagtcgtcgctacgtgtgcccaggttctgaat 815


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6443
Number of Sequences: 1807
Number of extensions: 6443
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)