BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC15ZD11RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig330                                                         1614   0.0  

>3x_Contig330 
          Length = 1954

 Score = 1614 bits (814), Expect = 0.0
 Identities = 862/872 (98%), Gaps = 5/872 (0%)
 Strand = Plus / Minus

                                                                        
Query: 54   ctttcaataaaagggtttatctttttcctagcaattgtgtttaaaactcttcaaaaatca 113
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1163 ctttcaataaaagggtttatctttt-cctagcaattgtgtttaaaactcttcaaaaatca 1105

                                                                        
Query: 114  gaagtgaacaagaatatggcataaagatactgtaatgaagatct-ctttaatgcaataaa 172
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1104 gaagtgaacaagaatatggcataaagatactgtaatgaagatcttctttaatgcaataaa 1045

                                                                        
Query: 173  gtgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattg 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 gtgtttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattg 985

                                                                        
Query: 233  agatgatattgaatttacttttttccttttcattgttgtcaaatcaagattataaaatcc 292
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 984  agatgatatggaatttacttttt-ccttttcattgttgtcaaatcaagattataaaatcc 926

                                                                        
Query: 293  aatgtcaatttaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaat 352
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  aatgtcaattgaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaat 866

                                                                        
Query: 353  tatcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcga 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  tatcaatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcga 806

                                                                        
Query: 413  ctgttcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatg 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  ctgttcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatg 746

                                                                        
Query: 473  tctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaa 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  tctttgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaa 686

                                                                        
Query: 533  aatctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcg 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  aatctaataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcg 626

                                                                        
Query: 593  agcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatc 652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  agcatgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatc 566

                                                                        
Query: 653  ttttcaatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggt 712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565  ttttcaatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggt 506

                                                                        
Query: 713  gaacgtaaagaattagtcgagttttcaagtagaacagatccttggccaaaaacctccaaa 772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505  gaacgtaaagaattagtcgagttttcaagtagaacagatccttggccaaaaacctccaaa 446

                                                                        
Query: 773  atctttggaatagcagcttcttgcanatcccattgatattctcgaatcttttcttcaccg 832
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445  atctttggaatagcagcttcttgcaaatcccattgatattctcgaatcttttcttcaccg 386

                                                                        
Query: 833  ccgcatatgtccttacggaatttcaatgcttccttc-cagcanaata-gacgagtacgaa 890
            |||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct: 385  ccgcatatgtccttacggaatttcaatgcttcctccacagcaaaataggacgagtacgaa 326

                                            
Query: 891  acggtgccgataaaggcaaatttgttaacaag 922
            ||||||||||||||||||||||||||||||||
Sbjct: 325  acggtgccgataaaggcaaatttgttaacaag 294


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8383
Number of Sequences: 1807
Number of extensions: 8383
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)