BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1586 1687 0.0
>3x_Contig1586
Length = 12315
Score = 1687 bits (851), Expect = 0.0
Identities = 871/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Plus
Query: 43 attagccttcttttcca-ttcggcttcttcatacaacggtaaaatacactttttacccag 101
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 attagccttcttttccaattcggcttcttcatacaacggtaaaatacactttttacccag 3073
Query: 102 ttctgtcttgaaatgtctacctagggcatcacttctggcaaacttcttaccacagcccca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 ttctgtcttgaaatgtctacctagggcatcacttctggcaaacttcttaccacagcccca 3133
Query: 162 ggaattaccgttcttcaatatacctccacagacatatcttcttttacctgtatgaagatc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ggaattaccgttcttcaatatacctccacagacatatcttcttttacctgtatgaagatc 3193
Query: 222 ctcatgacgatttttgtcatgcattctagcaaatgctttaccgcaaacggaacacacata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 ctcatgacgatttttgtcatgcattctagcaaatgctttaccgcaaacggaacacacata 3253
Query: 282 aggtctctcgtccgtatgtgatcgtagatgtgacttgagattataaggcctggtgaattt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 aggtctctcgtccgtatgtgatcgtagatgtgacttgagattataaggcctggtgaattt 3313
Query: 342 tttatcgcagatatcacatgcataaactgccggatgtttttgagcttgttttttctttgt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 tttatcgcagatatcacatgcataaactgccggatgtttttgagcttgttttttctttgt 3373
Query: 402 agtcccaatcaagttcaaagttgactcgccattatcttttggtttatcctcagtattagg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 agtcccaatcaagttcaaagttgactcgccattatcttttggtttatcctcagtattagg 3433
Query: 462 aactttgcctccaagtttcaaaagatgttcccgatctctactaagagaacgggcacgttc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3434 aactttgcctccaagtttcaaaagatgttcccgatctctactaagagaacgggcacgttc 3493
Query: 522 atctggagacaaggaccttgtagaaatagactttctcgatgtcgaacgtgatctagagtg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3494 atctggagacaaggaccttgtagaaatagactttctcgatgtcgaacgtgatctagagtg 3553
Query: 582 tgacctagaatgcgatctatttctatttcttcgtccttcaagcatcttatcaaaggtatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3554 tgacctagaatgcgatctatttctatttcttcgtccttcaagcatcttatcaaaggtatc 3613
Query: 642 tgaaatattgtcattttctaacgggagtctgccttgaagtgtagtaaccgaaagtaaatc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3614 tgaaatattgtcattttctaacgggagtctgccttgaagtgtagtaaccgaaagtaaatc 3673
Query: 702 atgttgcaatgacagtgcattctgtagagatacttgttctgacatatctaacgtagactg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3674 atgttgcaatgacagtgcattctgtagagatacttgttctgacatatctaacgtagactg 3733
Query: 762 agtatcctgtgcattattattgtggctatcattgtttttttgtagcatctaagaacatct 821
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3734 agtatcctgtgcattattattgtggctatcattg-ttttttgtagcatctaagaacatct 3792
Query: 822 gatgagaattattgaaccccaatgatgcagtgggaggagtcgacagctctgaatgagtag 881
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3793 gatgagaattattgaacccaaatgatgcagtggaaggagtcgacagctctgaatgagtag 3852
Query: 882 tatcaaaagtacttgtcactgtacctacagtgggt 916
|||||||||||||||||||||||||||||||||||
Sbjct: 3853 tatcaaaagtacttgtcactgtacctacagtgggt 3887
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6566
Number of Sequences: 1807
Number of extensions: 6566
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)