BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE04FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig671 749 0.0
>3x_Contig671
Length = 1730
Score = 749 bits (378), Expect = 0.0
Identities = 385/386 (99%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 82 tgatgctcgtactacggaagcatggttgggtacaattgctctaggacgtgtcttaacgtc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatgctcgtactacggaagcatggttgggtacaattgctctaggacgtgtcttaacgtc 330
Query: 142 gcccactgcgatttttaggtcttctgcctgcggaatggtgtctccaaggaatgaaatgat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcccactgcgatttttaggtcttctgcctgcggaatggtgtctccaaggaatgaaatgat 270
Query: 202 ctttaataaatcaaagccatttttctctctcaaagccggctcgagagatttaggcttatt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctttaataaatcaaagccatttttctctctcaaagccggctcgagagatttaggcttatt 210
Query: 262 gttgtttacgtgaaatagaactacgtgatcaatgataccacttatcaagatgtctctatc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gttgtttacgtgaaatagaactacgtgatcaatgataccacttatcaagatgtctctatc 150
Query: 322 atccttaacttgcccttctatcaactggcaagatcttgaatcgatatacccgtggcatag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 atccttaacttgcccttctatcaactggcaagatcttgaatcgatatacccgtggcatag 90
Query: 382 aatttcacgagcttcacccgagctaaatagagtaagtaacctgtgaatacactggaacca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aatttcacgagcttcacccgagctaaatagagtaagtaacctgtgaatacactggaacca 30
Query: 442 attatctgctaa-ctgatgtgtatca 466
|||||||||||| |||||||||||||
Sbjct: 29 attatctgctaagctgatgtgtatca 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8031
Number of Sequences: 1807
Number of extensions: 8031
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)