BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE04RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1185 0.0
>3x_Contig1771
Length = 25932
Score = 1185 bits (598), Expect = 0.0
Identities = 683/705 (96%), Gaps = 5/705 (0%)
Strand = Plus / Plus
Query: 41 gctttgaaagagaaaaaaacgattttggagcttctccggaagatgaagaataaagttcaa 100
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18227 gctttgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaa 18286
Query: 101 gcattagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18287 gcattagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcga 18346
Query: 161 tagttatcctagcaattagtatatccaaaggaaggctgtagatataaacaacatgggtgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18347 tagttatcctagcaattagtatatccaaaggaaggctgtagatataaacaacatgggtgg 18406
Query: 221 tttcagatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcag 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18407 tttcagatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcag 18466
Query: 281 agacaatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaatt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18467 agacaatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaatt 18526
Query: 341 cattgctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527 cattgctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttc 18586
Query: 401 tgtgatgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggaca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18587 tgtgatgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggaca 18646
Query: 461 ctccagatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18647 ctccagatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccag 18706
Query: 521 gaaaggtgatctaccttgtgtgaagaanggtgtatggtagatgcagtttaacatcttttg 580
|||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 18707 gaaaggtgatctacctggtgtgaagaagggtgtatggtagatgcagtttagcatcttttg 18766
Query: 581 tttcctgatactgaggttag-aaaagttggaatctttctcttccgcatgcatgt-aatat 638
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 18767 ttccctgatactgaggttagtaaaagttggaatctttctctcccgcatgcatgtaaatat 18826
Query: 639 ttttaatttacttcacctattttaaagcttgggtttagacattaaaaaataccaagttta 698
|||||||| ||| || || | ||||||||| || ||||||||||||||||| | |||||
Sbjct: 18827 ttttaattaactcaacata-tataaagcttgtgtatagacattaaaaaatacaaggttta 18885
Query: 699 atcaatgtaaaagaagccgcttgggttgggggcaaaccaagtgac 743
|||||||||||||||| |||||||||| | |||||| ||||||||
Sbjct: 18886 atcaatgtaaaagaag-cgcttgggtt-gtggcaaagcaagtgac 18928
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8535
Number of Sequences: 1807
Number of extensions: 8535
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)