BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE06FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1631 0.0
3x_Contig38 1049 0.0
>3x_Contig1517
Length = 8289
Score = 1631 bits (823), Expect = 0.0
Identities = 853/861 (99%), Gaps = 2/861 (0%)
Strand = Plus / Minus
Query: 87 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 5293
Query: 147 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5292 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 5233
Query: 207 acatatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5232 acatatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcg 5173
Query: 267 atcaagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5172 atcaagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacg 5113
Query: 327 aaactttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5112 aaactttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccag 5053
Query: 387 aaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5052 aaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtag 4993
Query: 447 cagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 cagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatac 4933
Query: 507 aatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932 aatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataa 4873
Query: 567 ctataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 ctataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaac 4813
Query: 627 cgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 cgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaa 4753
Query: 687 taaaaggatgtgggatgtagttgaacgcgaattgagtggttcanacaaaaatgataagat 746
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4752 taaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 4693
Query: 747 atatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 atatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatga 4633
Query: 807 ctggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccanaatt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4632 ctggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaaaatt 4573
Query: 867 ggatgaaatagatatgaatgttgagactgcagcaatattccagagttgatctgggcacgg 926
|||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||| |
Sbjct: 4572 agatgaagtagatatgaatgttgagactgcagc-agattccagagttgatct-ggcaccg 4515
Query: 927 aatctcatgcatagaaatgat 947
|||||||||||||||||||||
Sbjct: 4514 aatctcatgcatagaaatgat 4494
>3x_Contig38
Length = 925
Score = 1049 bits (529), Expect = 0.0
Identities = 574/590 (97%), Gaps = 11/590 (1%)
Strand = Plus / Minus
Query: 329 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 524
Query: 389 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 464
Query: 449 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 404
Query: 509 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 568
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacc----------cgataact 354
Query: 569 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 294
Query: 629 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 234
Query: 689 aaaggatgtgggatgtagttgaacgcgaattgagtggttcanacaaaaatgataagatat 748
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 aaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagatat 174
Query: 749 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 114
Query: 809 ggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccanaattgg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 113 ggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaaaattag 54
Query: 869 atgaaatagatatgaatgttgagactgcagcaatattccagagttgatct 918
||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 53 atgaagtagatatgaatgttgagactgcagc-agattccagagttgatct 5
Score = 329 bits (166), Expect = 6e-90
Identities = 190/198 (95%)
Strand = Plus / Minus
Query: 87 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 146
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 815 cagtgatagaaaaaataaaattagacttataacgttgttgaagtaaaccaagttgctgtg 756
Query: 147 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 696
Query: 207 acatatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcg 266
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 695 acatatctcttagaagaaacaaaagaagaaaagcatattaaaggcaatattgaaggctcg 636
Query: 267 atcaagagatatctaaca 284
|||||||||||||||||
Sbjct: 635 ttcaagagatatctaaca 618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7599
Number of Sequences: 1807
Number of extensions: 7599
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)