BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE06RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1665 0.0
>3x_Contig1711
Length = 15491
Score = 1665 bits (840), Expect = 0.0
Identities = 887/898 (98%), Gaps = 4/898 (0%)
Strand = Plus / Plus
Query: 44 gctttagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 gctttagaggaagaagaagaaagattagaatctgaaggcttctatgaatccgacgaagaa 3836
Query: 104 gaaacttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3837 gaaacttacgaaggatttgatgctgacgaaatctctgagatcagagaaaaggcagaatgg 3896
Query: 164 attagagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaataac 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3897 attagagatagacaaaagaagatgatcaatgcttcaagaaacagaaaggcattgaagaac 3956
Query: 224 cgtggtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3957 cgtggtaccatgcctcgttctaaattggcaaagacatatggtgacatggagaagcacatg 4016
Query: 284 tcttctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4017 tcttctttaggtcacgatatgactgctttgcaagataagcaaagagtcgctgctgaaaag 4076
Query: 344 aacagatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctcca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 aacagatatgagcaaactggtgctgacgtggtatacggtgatcaagaagattctgctcca 4136
Query: 404 gctggtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 gctggtaagctaagacagacagatagattgacagacggtgttgctgatggttcaatgaga 4196
Query: 464 tcgaaggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197 tcgaaggctgaaagaatggccaaattagaaagaagagaaagaaacagaatggccagagcc 4256
Query: 524 ggtgaatctgacagacatgctactgcctctctaccaaaacatttgttctcaggtaagcgt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4257 ggtgaatctgacagacatgctactgcctctctaccaaaacatttgttctcaggtaagcgt 4316
Query: 584 ggtgttggtaagactgatttccgttaaactgtctgttcttccttcctttccatcactggt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4317 ggtgttggtaagactgatttccgttaaactgtctgttcttccttcctttccatcactggt 4376
Query: 644 gatttcgaacatatattatcgtgttgccaatttcttttctatctctattgaactatatat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4377 gatttcgaacatatattatcgtgttgccaatttcttttctatctctattgaactatatat 4436
Query: 704 attagtcactactttcatttatttgtctgcattgggtgggttaaaattaattattactcc 763
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4437 attagtcactactttcatttatttgtctgcattgggtgggttaaatttaattattactcc 4496
Query: 764 tttatttgtaaaatagttacgtactctgtaaaa-tataagagttatacctttgatttgct 822
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4497 tttatttgtaaaatagttacgtactctgtaaaattataagagttatacctttgatttgc- 4555
Query: 823 ttttccttgaccaaataa-caacatncctctgacctcagtaacaattttatctttgaaag 881
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4556 ttttccttgaccaaataaccaacatccctctgacctcagtaacaattttatctttgaaag 4615
Query: 882 ntattgactaatcttgaagaaataaaaggatgaaaattgttaggatcttaataaaata 939
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 4616 ttattgactaatcttgaagaataaaaaggatgaaaattg-taggatctaaataaaata 4672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9892
Number of Sequences: 1807
Number of extensions: 9892
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)