BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE08FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1118 894 0.0
3x_Contig193 533 e-151
>3x_Contig1118
Length = 5540
Score = 894 bits (451), Expect = 0.0
Identities = 572/599 (95%), Gaps = 12/599 (2%)
Strand = Plus / Plus
Query: 364 tgatctagaagatattttacaacatttatgtggccattc-gcggaagcatcaataagagg 422
||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||
Sbjct: 386 tgatctagaagatgttttagaagatttatgtggcgattgtgcggaagcatcaataagagg 445
Query: 423 cgtatctagaaacatatcatatgattgaatattaacattagctccatttcttacgagcaa 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 cgtatctagaaacatatcatatgattgaatattaacattagctccatgtcttacgagcaa 505
Query: 483 ctcgacaattgctgaatgac-catttagagctgcttcgtgtagtggcgtatttccagcgt 541
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctcgacaattgctgaatgacgcatttagagctgcttcgtgtagtggcgtatttccagcgt 565
Query: 542 tgtcttggtcgttaacgtcatagccgtcttcttcaataagtttttttgccaaatcatatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgtcttggtcgttaacgtcatagccgtcttcttcaataagtttttttgccaaatcatatt 625
Query: 602 tgcctttatcacaagcaatttgtagttttgtcctgcctccggcatccctatgtactccac 661
||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 626 tgcctttattacaagcaatttgtagttttgttc--cctccggcatccctatgtactccac 683
Query: 662 gcttagtcttcggtatctttttcccggcagaatgtttttgcttcttgtgattggaggagt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcttagtcttcggtatctttttcccggcagaatgtttttgcttcttgtgattggaggagt 743
Query: 722 tttctatactagaggatttgcgcttgtgttcattataatgtttcaccggnagaggaatct 781
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 744 tttctatactagaggatttgcgcttgtgttcattataatgtttcaccgg-agaggaatct 802
Query: 782 tcgtgaatcgcactgcttgatattttagctgtacgagcctcatcnntaatc-gnaagatc 840
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct: 803 tcgtgaatcgcactgcttgatattttagctgtacgagcctcatcta-aatcggaaagatc 861
Query: 841 agaaatcggatttcccatcattttgtc-atactggagcacttgattgtcgacttgttgtt 899
|| ||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||
Sbjct: 862 ag-aatcggattccccatca-tttgtcaatactggagcacttgattgtcgac-tgttgtt 918
Query: 900 t-cgcttttcagttgatcacctcgtattagtctccccatttttgttcttggtggcgatg 957
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 919 tccgctttcaagttgatcacctcgtattagtctccccatttttggtcttggtggcgatg 977
>3x_Contig193
Length = 799
Score = 533 bits (269), Expect = e-151
Identities = 272/273 (99%)
Strand = Plus / Minus
Query: 89 tcaaaagcttgtttttacccaattttgaactgatatcagtccaataaaagtcgtcatcat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaaaagcttgtttttacccaattttgaactgatatcagtccaataaaagtcgtcatcat 229
Query: 149 ggttgagttgtttgtctatatcatctgaatgtcttgacatggaactagactgtaaggtgc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ggttgagttgtttgtctatatcatctgaatgtcttgacatggaactagactgtaaggtgc 169
Query: 209 gatgggaatgttttatttatttcctcgttgctctctttaacatatctttcatatcgtgca 268
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gatgggaatgttttatatatttcctcgttgctctctttaacatatctttcatatcgtgca 109
Query: 269 ctattcttctatcatcattatccatgtctgattcctcctcaatagattcaattgcactta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ctattcttctatcatcattatccatgtctgattcctcctcaatagattcaattgcactta 49
Query: 329 gacctttggcatttaccattgttggatctgctc 361
|||||||||||||||||||||||||||||||||
Sbjct: 48 gacctttggcatttaccattgttggatctgctc 16
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)