BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC15ZE08RM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1203                                                        1641   0.0  

>3x_Contig1203 
          Length = 4988

 Score = 1641 bits (828), Expect = 0.0
 Identities = 856/863 (99%), Gaps = 2/863 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   gcttgacattacgagngctggacttttccgatatcaattaatagacctttactcttttgg 106
            ||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 3667 gcttgacattacgag-gctggacatc-ccgatatcaattaatagacctttactcttttgg 3724

                                                                        
Query: 107  gaaagggagaaaattgaataggtttagtggcaatggcggttaaaatccctaaatgaaggt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 gaaagggagaaaattgaataggtttagtggcaatggcggttaaaatccctaaatgaaggt 3784

                                                                        
Query: 167  agggaaggaggcttatcttgcagacaagaaaatacattgtagagcagggaaacttaatac 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 agggaaggaggcttatcttgcagacaagaaaatacattgtagagcagggaaacttaatac 3844

                                                                        
Query: 227  attttttgctccttcggattcagatgcccaaataagtctggaaagatgacatatcacttt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 attttttgctccttcggattcagatgcccaaataagtctggaaagatgacatatcacttt 3904

                                                                        
Query: 287  aaaataccatatcgatacgtaactgtgcattcttttataggttactatcgtgtatagtag 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 aaaataccatatcgatacgtaactgtgcattcttttataggttactatcgtgtatagtag 3964

                                                                        
Query: 347  ttttatagatcatggttctccattatgttggtacggagaagcagtgagtaacttaaggaa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 ttttatagatcatggttctccattatgttggtacggagaagcagtgagtaacttaaggaa 4024

                                                                        
Query: 407  gtaatttgtcatgcgcgatgcatcgatcttccagcatttttgtgctttaagttcattagt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 gtaatttgtcatgcgcgatgcatcgatcttccagcatttttgtgctttaagttcattagt 4084

                                                                        
Query: 467  tagcctgtaaatcaaattcttagtgtattaatccagaggaatcttctcactttgcaggtt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 tagcctgtaaatcaaattcttagtgtattaatccagaggaatcttctcactttgcaggtt 4144

                                                                        
Query: 527  acggaagagaagttcattcattgtgagcacctcgactaggattaaacggtgaatccaaag 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 acggaagagaagttcattcattgtgagcacctcgactaggattaaacggtgaatccaaag 4204

                                                                        
Query: 587  gtgatttgcaacagaatcctaatttaccgatgcatagcagtcatgcgtcgtccaataatt 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4205 gtgatttgcaacagaatcctaatttaccgatgcatagcagtcatgcgtcgtccaataatt 4264

                                                                        
Query: 647  aacatattgtcgtacttcatccaatttacacataaatgattcatttactgccataagggg 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4265 aacatattgtcgtacttcatccaatttacacataaatgattcatttactgccataagggg 4324

                                                                        
Query: 707  ggcagggcgtntctactgaagctattaaaggaaattcggtattatctatatcggtaagtt 766
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4325 ggcagggcgtttctactgaagctattaaaggaaattcggtattatctatatcggtaagtt 4384

                                                                        
Query: 767  tagccgccatattttcttgaaaaattttcctttcagttgttgtagccaaactgtggggaa 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4385 tagccgccatattttcttgaaaaattttcctttcagttgttgtagccaaactgtggggaa 4444

                                                                        
Query: 827  aggagaactatggtcagaagcgatcgcaatgtttaccactcacatcatgacgtgcaatat 886
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 4445 gggagaactatggtcagaagcgatcgcaatgtttaccactcacatcatgacgtgcaatag 4504

                                   
Query: 887  gtgcgccatattgggtcatatat 909
            |||||||||||||||||||||||
Sbjct: 4505 gtgcgccatattgggtcatatat 4527


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5832
Number of Sequences: 1807
Number of extensions: 5832
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)