BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC15ZE09FM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig781                                                          450   e-126

>3x_Contig781 
          Length = 2349

 Score =  450 bits (227), Expect = e-126
 Identities = 316/335 (94%), Gaps = 8/335 (2%)
 Strand = Plus / Plus

                                                                       
Query: 635 tattcgactcagtttcaaaagtacctg-acacagaaaagccttgtttggttggacgatcc 693
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4   tattcgactcagtttcaaaagtacctggacacagaaaagccttgtttggttggacgatcc 63

                                                                       
Query: 694 tgttgtttgtacagaagcgtgctgtttccgagacaagcccttgctaaaagaaaaatcaga 753
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 64  tgttgtttgtacagaagcgtgctgtttccgagacaagccctcgctaaaagaaaaatcaga 123

                                                                       
Query: 754 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcaaaccgaa 813
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 124 ggacccagtttcctttttttttttttggatattttcctatcacttgccattcagaccgaa 183

                                                                       
Query: 814 agttatatttttttcacgtgacagatattc-caggacatctaatggaaagt-aggatttc 871
           |||||||||||||  ||||||||||||||| ||| ||||||||| |||||| ||||||||
Sbjct: 184 agttatattttttcaacgtgacagatattcacagaacatctaatagaaagtaaggatttc 243

                                                                       
Query: 872 aaggcgattagcagtgcaagcaaaggg-atgcta-ttgaagtaagagcccaga-cagctt 928
           |||||||| |||||||||||||||||| |||||| | |||||||||||||||| ||||| 
Sbjct: 244 aaggcgatgagcagtgcaagcaaagggaatgctactggaagtaagagcccagagcagctc 303

                                              
Query: 929 ttagagga-agacggc-ctttctagttcaattgta 961
           |||||||| ||||||| ||| ||||| ||||||||
Sbjct: 304 ttagaggagagacggcacttgctagtacaattgta 338


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,740
Number of Sequences: 1807
Number of extensions: 14740
Number of successful extensions: 228
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)