BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE09RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1669 0.0
>3x_Contig1426
Length = 8319
Score = 1669 bits (842), Expect = 0.0
Identities = 888/897 (98%), Gaps = 5/897 (0%)
Strand = Plus / Minus
Query: 44 gcttattgtcagcatcgcacgatcttttgagtttcaaaaagagcaatcttactatgaaaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5944 gcttattgtcagcatcgcacgatcttttgagtttcaaaaagagcaatcttactatgaaaa 5885
Query: 104 acccatttcacaaaaaagagactaatgaatatgatgaagatcaaattaatagataccacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5884 acccatttcacaaaaaagagactaatgaatatgatgaagatcaaattaatagataccacg 5825
Query: 164 gcttcaaactgccatcaaagagaagttggttaccgtggcgtcataaaacagagaacgttt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 gcttcaaactgccatcaaagagaagttggttaccgtggcgtcataaaacagagaacgttt 5765
Query: 224 acttcagaacgtttaactggaaaacggaatcaccatctagttgttctgatcttgagcaag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 acttcagaacgtttaactggaaaacggaatcaccatctagttgttctgatcttgagcaag 5705
Query: 284 gttttgatactgatgaaccagggaaggacatcggtcgtcaaaaaaaaaatgatggaagtg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 gttttgatactgatgaaccagggaaggacatcggtcgtcaaaaaaaaaatgatggaagtg 5645
Query: 344 gaaatgtgagtatctttagggtgattttttggtggattgctgaattgattccaataggaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 gaaatgtgagtatctttagggtgattttttggtggattgctgaattgattccaataggaa 5585
Query: 404 taagaatcgaaaacgaaaagtgtgaatggaaaaacgtttacgtgccaaattttggtagaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 taagaatcgaaaacgaaaagtgtgaatggaaaaacgtttacgtgccaaattttggtagaa 5525
Query: 464 gacggaatatacctgaatatggcgaacttcattggtcagtttactggaggataaagcttg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 gacggaatatacctgaatatggcgaacttcattggtcagtttactggaggataaagcttg 5465
Query: 524 tcaacgattacaaaccgaagaatttgccagattattgcgtagatttaattgagcagcatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 tcaacgattacaaaccgaagaatttgccagattattgcgtagatttaattgagcagcatg 5405
Query: 584 aaaagatatcccttccaaagaggaagaacggtgaaacgaagaagaaagttatggtcagat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5404 aaaagatatcccttccaaagaggaagaacggtgaaacgaagaagaaagttatggtcagat 5345
Query: 644 cttcgttgacttcatctttgatatcataccctggacttgattcagaaccattgctgcctc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5344 cttcgttgacttcatctttgatatcataccctggacttgattcagaaccattgctgcctc 5285
Query: 704 ctgatagtgtcaatgacgggtgcaattgtcag-aaagggatatcaacaaaataagaaaag 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5284 ctgatagtgtcaatgacgggtgcaattgtcagaaaagggatatcaacaaaataagaaaag 5225
Query: 763 agatgtgtgatatgctaaccgaatgggatcgagaanaattgcagcgaattccagatgatc 822
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 5224 agatgtgtgatatgctaaccgaatgggatcgagaaaattggcagcgaattccagatgatc 5165
Query: 823 ttgaaagcttgttagaagctaacccagaactttagtctac-aacagcactggatttttc- 880
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5164 ttgaaagcttgttagaagctaacccagaactttagtctacaaacagcactggatttttca 5105
Query: 881 agggttcccaattttc-gcgttcaaatggattaaa-ttgttcatttctttttaaaga 935
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct: 5104 agggttcccaattttcggcgttcaaatggattaaatttgttcatttcttttaaaaga 5048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9259
Number of Sequences: 1807
Number of extensions: 9259
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)