BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC15ZE10FM1.SCF screened BAC_end (868 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1711 206 5e-53 >3x_Contig1711 Length = 15491 Score = 206 bits (104), Expect = 5e-53 Identities = 146/152 (96%), Gaps = 6/152 (3%) Strand = Plus / Plus Query: 82 ccaaattatcatctgaacttgttcgtttgaataaattcacttttttgcatttatntagaa 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 7894 ccaaattatcatctgaacttgttcgtttgaataaattcacttttttgcatttat-tagaa 7952 Query: 142 aggtaancttctacnttatcgaggggaagcattgatacatcattaatcttaaaagaaaca 201 |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7953 aggtaa-cttctac-ttatcgagggg-agcattgatacatcattaatcttaaaagaaaca 8009 Query: 202 tcatgtcattattaattgtcgattcattcagg 233 ||||||||||||| |||| ||||||||||||| Sbjct: 8010 tcatgtcattatt-attg-cgattcattcagg 8039 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 58,568 Number of Sequences: 1807 Number of extensions: 58568 Number of successful extensions: 7823 Number of sequences better than 1.0e-20: 1 length of query: 868 length of database: 10,358,551 effective HSP length: 16 effective length of query: 852 effective length of database: 10,329,639 effective search space: 8800852428 effective search space used: 8800852428 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)