BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZE10RM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1433 0.0
>3x_Contig1009
Length = 4650
Score = 1433 bits (723), Expect = 0.0
Identities = 789/806 (97%), Gaps = 4/806 (0%)
Strand = Plus / Plus
Query: 40 gcttcaggtttcgctacccactttttgaagacaaataaagcgtacctgtcctatttgact 99
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1604 gcttcaggtttcgctacccactctgtgaagacaaataaagcgtacctgtcctatttgact 1663
Query: 100 atgggattcaccattccatttgtcgtttcatactattcgacttattctagtgctcaggat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 atgggattcaccattccatttgtcgtttcatactattcgacttattctagtgctcaggat 1723
Query: 160 gagttgaaaggaaggtcaaatccaagattatatttcggaaggttcctatgatcggtttaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 gagttgaaaggaaggtcaaatccaagattatatttcggaaggttcctatgatcggtttaa 1783
Query: 220 atcatggactacttgtatgaaaaaggttgcaggacttatgcctttttttttatgaatagt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1784 atcatggactacttgtatgaaaaaggttgcaggacttatgcctttttttttatgaatagt 1843
Query: 280 tttttcccctcctttccccgacttcaattcaatatcccttccgcgactattctcttctct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 tttttcccctcctttccccgacttcaattcaatatcccttccgcgactattctcttctct 1903
Query: 340 attttatttcgacggttaaattaagagtcaattatttctctagactctctctggttatgg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1904 attttatttcgacggttaaattaagagtcaattatttctctagactctctctggttatgg 1963
Query: 400 ttttagatagatcatcagttataactatatttttataatgtaaggaattatactttttca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 ttttagatagatcatcagttataactatatttttataatgtaaggaattatactttttca 2023
Query: 460 ctaaatttaactcaatcttctcttctctcatactttccaggtaataccactttatgactg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 ctaaatttaactcaatcttctcttctctcatactttccaggtaataccactttatgactg 2083
Query: 520 gaatgacacaaagagccagtaattagccaaacatgaccacgtcaaaggaccccattacct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 gaatgacacaaagagccagtaattagccaaacatgaccacgtcaaaggaccccattacct 2143
Query: 580 gngaacagagtaaacattatatcaagaccggtgagttgtacaagttgatccggtcaccgg 639
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 gggaacagagtaaacattatatcaagaccggtgagttgtacaagttgatccggtcaccgg 2203
Query: 640 aaattacggccaaatatcgcaagcataaatccgagcttgaatctaaa-gccaagaattgg 698
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 2204 aaattacggccaaatatcgcaagcataaatccgagcttgaatctaaaggccaagatttgg 2263
Query: 699 tcttccttatcctcacttccagattacactgggatgtgaaagatttg-accacttttata 757
||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 2264 tctcctttatcctcacttccagattacactgggatgtgaaagaattgaaccactttaata 2323
Query: 758 atatagctttcgccttcgatgaggattagattaaaaacttgtttaaggat-agactactt 816
||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |
Sbjct: 2324 atatagctttcgcctcggatgaggataagattaaaaccttgtttaaggataagactacgt 2383
Query: 817 tggaagattcttacgaatgattaccc 842
| ||||||||||||||||||||||||
Sbjct: 2384 t-gaagattcttacgaatgattaccc 2408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6885
Number of Sequences: 1807
Number of extensions: 6885
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)