BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF01FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1481 0.0
>3x_Contig1771
Length = 25932
Score = 1481 bits (747), Expect = 0.0
Identities = 842/863 (97%), Gaps = 8/863 (0%)
Strand = Plus / Plus
Query: 86 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 14578
Query: 146 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 14638
Query: 206 aacttttggaggcctacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 aacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 14698
Query: 266 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 14758
Query: 326 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 14818
Query: 386 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14819 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 14878
Query: 446 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14879 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 14938
Query: 506 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14939 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 14998
Query: 566 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14999 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 15058
Query: 626 gaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtcttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15059 gaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtcttct 15118
Query: 686 atatactgttaaaacgttcaatggtactaggaaattctgtagttgtgactcgggatcgtt 745
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15119 atatactg-taaaacgtccaatggtactaggaaattctgtagttgtgactcgggatcgtt 15177
Query: 746 agcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccatacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15178 agcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccatacc 15237
Query: 806 ttgcattgaatcttca-ttcctggggaaatc-ttaacattaac-ccaagcttcatgaatg 862
|||||||||||||||| ||||| |||||||| | ||||| ||| ||||||| |||||||
Sbjct: 15238 ttgcattgaatcttcagttcct-gggaaatcataaacataaacaccaagctcaatgaatg 15296
Query: 863 agtcaattatcccagctgggcgtttgttctgtcttaacccaaatcggttggcaatttctt 922
||||||||||| ||||| |||| ||||||||||| || ||||||||||| |||||||| |
Sbjct: 15297 agtcaattatcgcagctaggcg-ttgttctgtctcaa-ccaaatcggtttgcaatttc-t 15353
Query: 923 ttaagtttggctctaccacctcg 945
||||||| ||||||||| ||||
Sbjct: 15354 ctaagttttgctctaccatctcg 15376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6305
Number of Sequences: 1807
Number of extensions: 6305
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)