BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF01RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1645 0.0
>3x_Contig1697
Length = 16220
Score = 1645 bits (830), Expect = 0.0
Identities = 859/866 (99%), Gaps = 2/866 (0%)
Strand = Plus / Plus
Query: 54 cttcaccggaaaagatcagagttttttctgtcctgcagtcactacgtatttcatacggac 113
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10471 cttcaccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggac 10530
Query: 114 atgaagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10531 atgaagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacc 10590
Query: 174 caattccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagtta 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10591 caattccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagtta 10650
Query: 234 ctgctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10651 ctgctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacat 10710
Query: 294 ctcttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10711 ctcttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaa 10770
Query: 354 aaacacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgtta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10771 aaacacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgtta 10830
Query: 414 agaagttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10831 agaagttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgca 10890
Query: 474 gtatcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctact 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10891 gtatcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctact 10950
Query: 534 acaggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10951 acaggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccat 11010
Query: 594 tctcataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11011 tctcataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatct 11070
Query: 654 gctccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11071 gctccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaa 11130
Query: 714 caacaaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11131 caacaaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagat 11190
Query: 774 tattcacacgtcccatgcaagtttttcgtgcaaggaaattgtcaagcgggagaatttctg 833
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 11191 tattcacacgtcccatgcaagtttttcgtgcaaggaaattgtcaagcgggag-attcctg 11249
Query: 834 tcccttctctcacgatttgaacaattctacgagtgaacaattatgtaagttttttcagaa 893
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct: 11250 tcccttctctcacgatttgaacaattctacgagtgaacaagtatgtaagtattttcag-a 11308
Query: 894 aagggaattgcaagtttggaatgaaa 919
||||||||||||||||||||||||||
Sbjct: 11309 aagggaattgcaagtttggaatgaaa 11334
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8206
Number of Sequences: 1807
Number of extensions: 8206
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)