BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF02FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1586 0.0
>3x_Contig1807
Length = 66587
Score = 1586 bits (800), Expect = 0.0
Identities = 870/889 (97%), Gaps = 4/889 (0%)
Strand = Plus / Plus
Query: 86 ttggatttaggaggtttgaagaaataattcaaattgttatctataatcgttcgtcgtcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34039 ttggatttaggaggtttgaagaaataattcaaattgttatctataatcgttcgtcgtcat 34098
Query: 146 cgtcatcgctgaaaaactttcattccgaagtagcaatggcagttaaggaggaagttgttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34099 cgtcatcgctgaaaaactttcattccgaagtagcaatggcagttaaggaggaagttgttg 34158
Query: 206 gtaaacaggctgttttttcgcacactgttgcagcaaatgagttcgacttggacgaaaaac 265
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34159 gtaaacaggctgtctcatcgcacactgttgcagcaaatgagttcgacttggacgaaaaac 34218
Query: 266 agcaacctgaagtcctcaatgagtatggccttccagataaattaaggttcaccagatcac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34219 agcaacctgaagtcctcaatgagtatggccttccagataaattaaggttcaccagatcac 34278
Query: 326 tagtgctaagaaagacggagattttggctcagcagtacgatacctggtactggaaagctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34279 tagtgctaagaaagacggagattttggctcagcagtacgatacctggtactggaaagctg 34338
Query: 386 tgctcttgttttctgtgtttctatgttcgtacggttatggattggatggatctgtcagaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34339 tgctcttgttttctgtgtttctatgttcgtacggttatggattggatggatctgtcagaa 34398
Query: 446 gcgtgtacactacgtatgctaccaattcatacagcacgcattcgttactctctacgatta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34399 gcgtgtacactacgtatgctaccaattcatacagcacgcattcgttactctctacgatta 34458
Query: 506 gtatcatcaacttagtgatcggtgcatcggcacaggtcttctttgccagattatctgacg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34459 gtatcatcaacttagtgatcggtgcatcggcacaggtcttctttgccagattatctgacg 34518
Query: 566 tttttggccgtttgacgttgttaatcgttgcaacggtgttttattcagtgggaactatca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34519 tttttggccgtttgacgttgttaatcgttgcaacggtgttttattcagtgggaactatca 34578
Query: 626 tccagtctcaggcttatgatgttcagaggtacgccgctggtgcagtgttctacaatgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34579 tccagtctcaggcttatgatgttcagaggtacgccgctggtgcagtgttctacaatgtgg 34638
Query: 686 gtctcgtgggtgttgtgttgcaagtgatcttaatcctatccgatttctcttcgttgagat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34639 gtctcgtgggtgttgtgttgcaagtgatcttaatcctatccgatttctcttcgttgagat 34698
Query: 746 ggagactattctacacctttgtcccatcctgnccctttcat-atcaacatgtgggtatca 804
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 34699 ggagactattctacacctttgtcccatcctggccc-ttcataatcaacatgtgggtatca 34757
Query: 805 ggtaacgttgtcaatgccgcaaatccactggaaaactgttcttgnagcatttgtatgtnn 864
|||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 34758 ggtaacgttgtcaatgccgcaaatccactggaaaactggtcttggagcattggtatgt-g 34816
Query: 865 ggcgtttatatttccgctcacttttttgccattggtatgttgcatcttgcacatgaaata 924
|||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 34817 ggcgtttatattcccgctcacatgtttgccattggtatgttgcatcttgcacatgagata 34876
Query: 925 cagggccagtaagactgagccttgaaggcac-tgcaactcgaaaagact 972
|||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct: 34877 cagggccagtaagactgaagcttggaggcacttgcaactcgaaaagact 34925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5361
Number of Sequences: 1807
Number of extensions: 5361
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)