BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF03FM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 1602 0.0
>3x_Contig1264
Length = 6524
Score = 1602 bits (808), Expect = 0.0
Identities = 885/900 (98%), Gaps = 8/900 (0%)
Strand = Plus / Minus
Query: 88 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 917
Query: 148 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 857
Query: 208 gaagaccttcagttactttatctaccaagagatacatacacttatatattccccttatga 267
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 856 gaagaccttcagttaccaaatctaccaagagatacatacacttatc-attccccttatga 798
Query: 268 gaatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gaatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatat 738
Query: 328 tcaagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataattt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcaagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataattt 678
Query: 388 gaagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgc 618
Query: 448 atcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcc 558
Query: 508 atatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaa 498
Query: 568 agaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggc 438
Query: 628 aaatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaa 378
Query: 688 taaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaag 318
Query: 748 ttgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttg 258
Query: 808 aatgactttttagtctttgcaaccaagatttctcg-tttttggatcttggttgacgttcc 866
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 257 aatgactttttagtctttgcaaccaaga-ttctcgttttttggatcttggttgacgttcc 199
Query: 867 tcttggccatctttcgaagtcgctgtctgttttttgaggttgggaaatcatctttactta 926
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 198 tcttggccatc-ttcgaagtcgctgtctg-tctttgaggttgggaaatcatctttactta 141
Query: 927 ttgccactatttgaaggcagttgtaacaatttttgcacttatttgtgctgcccgtcttgc 986
| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 140 tgcccacta-ttgaaggcagttgtaac-atttttgcac-tatttgtgctgcccgtcttgc 84
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,019
Number of Sequences: 1807
Number of extensions: 13019
Number of successful extensions: 1408
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)