BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF03RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig868 1746 0.0
>3x_Contig868
Length = 3693
Score = 1746 bits (881), Expect = 0.0
Identities = 895/900 (99%)
Strand = Plus / Plus
Query: 45 ctttattcttgtgtaatcgacctttttgatcttaacttttaaatatccattcgcttctgg 104
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2618 ctttattcttgtgtaatcgacctatctgatcttaacttttaaatatccattcgcttctgg 2677
Query: 105 attttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcagatg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2678 attttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcagatg 2737
Query: 165 taagtcatatctgaactggaatagtattacgtggaaaattatggcaaatacctatactga 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2738 taagtcatatctgaactggaatagtattacgtggaaaattatggcaaataccgatactga 2797
Query: 225 cggagggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcaccaat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2798 cggagggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcaccaat 2857
Query: 285 ctgtatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtgag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2858 ctgtatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtgag 2917
Query: 345 tgacgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataata 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2918 tgacgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataata 2977
Query: 405 cagtaaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattctca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2978 cagtaaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattctca 3037
Query: 465 atggttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtatct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3038 atggttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtatct 3097
Query: 525 tcttcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttggg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3098 tcttcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttggg 3157
Query: 585 gcatatttagtatgctctagattgctgaaaatattaagtagcactttatccaaatactcc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3158 gcatatttagtatgctctagattgctgaaaatattaagtagcactttatccaaatactcc 3217
Query: 645 ggtgtattgacgttatacatattagatggtctgacatccaatttgtaatcagggccataa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3218 ggtgtattgacgttatacatattagatggtctgacatccaatttgtaatcagggccataa 3277
Query: 705 tattcgtagtaatcgttgtaaggaagttcttcatccaaaatcacattattcagaataccc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 tattcgtagtaatcgttgtaaggaagttcttcatccaaaatcacattattcagaataccc 3337
Query: 765 gtttcgaaagcccatgtacgagccacgtttcgcattgtataaccaccaccaccaacaatc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 gtttcgaaagcccatgtacgagccacgtttcgcattgtataaccaccaccaccaacaatc 3397
Query: 825 atgagaggaacaccgaacgatttcatgtagttgacacagtttgcgtgacccttcattgaa 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 atgagaggaacaccgaacgatttcatgtagttgacacagtttgcgtgacccttcattgaa 3457
Query: 885 aggttgaaacaacctaaacgatcgccggataaanagtcaccaccgcattgtagtaccacg 944
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 3458 aggttgaaacaacctaaacgatcgccggataaagagtcaccaccgcattggagtaccacg 3517
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7226
Number of Sequences: 1807
Number of extensions: 7226
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)