BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF04FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1499 0.0
>3x_Contig1721
Length = 17834
Score = 1499 bits (756), Expect = 0.0
Identities = 825/840 (98%), Gaps = 6/840 (0%)
Strand = Plus / Plus
Query: 87 caagtagcattttctcgaactctaggtcctcttcgatgacattttggtctgtaacggtaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5455 caagtagcattttctcgaactctaggtcctcttcgatgacattttggtctgtaacggtaa 5514
Query: 147 tttgtgttccccatacagtacgttccttcatttttggtttcgatgaagcttcgtcatctg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5515 tttgtgttccccatacagtacgttccttcatttttggtttcgatgaagcttcgtcatctg 5574
Query: 207 gcgatgctgacaatgcaatatttgaaggatggttaacggtactggtcttctttgatggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5575 gcgatgctgacaatgcaatatttgaaggatggttaacggtactggtcttctttgatggaa 5634
Query: 267 actgagtggctggcttttgcataggtggatactggttattgttttcacgttggtagaatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5635 actgagtggctggcttttgcataggtggatactggttattgttttcacgttggtagaatt 5694
Query: 327 ctaggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcctctttgtttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5695 ctaggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcctctttgtttc 5754
Query: 387 tctttgtcatcgcttttctgtgcctttgtctcaactcagcaaagaatttgttataaactt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5755 tctttgtcatcgcttttctgtgcctttgtctcaactcagcaaagaatttgttataaactt 5814
Query: 447 cctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaactctgtaccaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 cctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaactctgtaccaa 5874
Query: 507 tcggtaaatgagagaaatacttgaatttggatatagttgtttccgtaaccattgatccgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5875 tcggtaaatgagagaaatacttgaatttggatatagttgtttccgtaaccattgatccgt 5934
Query: 567 aatggatgtcttcaactttgatcttgatagtgctagggaattcgtggtagtgtgcaaata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5935 aatggatgtcttcaactttgatcttgatagtgctagggaattcgtggtagtgtgcaaata 5994
Query: 627 cgtttttcaacaccttaacgtctaatggtgaaagataaaatttcgtggtggagttgaacc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5995 cgtttttcaacaccttaacgtctaatggtgaaagataaaatttcgtggtggagttgaacc 6054
Query: 687 cagcctcgtaatagaagaatgcattatcatcattgtantttttctaatccacctgatgca 746
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6055 cagcctcgtaatagaagaatgcattatcatcattgta-tttttctaatccacctgatgca 6113
Query: 747 ataaaaagggcagaaatatcggggctctttatttgttggtcttgggattttaatccgttg 806
||| |||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||
Sbjct: 6114 atagaaagggcagaaatatc-gggctcttta-ttgttgttctt-ggattttaatccgttg 6170
Query: 807 attaatgatacattttcatttaacgcttattgtgccagcttccccattatcgtgatacaa 866
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 6171 attaatgatacattttcatctaacgctaattgtgccagctt-cccattatcgtgatacaa 6229
Query: 867 cgccttatcgatttttacctgttcatatttttgtaaattatcccgttcc-ataaatggat 925
|||||||||||||| || |||||||||| | |||||||||||||| ||| ||||||||||
Sbjct: 6230 cgccttatcgatttctaactgttcatatatctgtaaattatcccgctccaataaatggat 6289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6659
Number of Sequences: 1807
Number of extensions: 6659
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)