BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF04RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1191 1618 0.0
>3x_Contig1191
Length = 4114
Score = 1618 bits (816), Expect = 0.0
Identities = 841/849 (99%), Gaps = 1/849 (0%)
Strand = Plus / Plus
Query: 52 attttacgtgaattttcgtagaagtgacggtgcccttgttcattgcatgaggcgcaggca 111
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attttacgtgaatttccgtagaagtgacggtgcccttgttcattgcatgaggcgcaggca 450
Query: 112 gcctaagaatgcggacggaacaatgtgtcggaaatccgcctgatgaagggcttaaccgcg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcctaagaatgcggacggaacaatgtgtcggaaatccgcctgatgaagggcttaaccgcg 510
Query: 172 ctgtaattctgaaggaaaagggaaacagggctcgtatctactttgcctagctgcgcccag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctgtaattctgaaggaaaagggaaacagggctcgtatctactttgcctagctgcgcccag 570
Query: 232 cccctcatggtcccgtcactaactggtgaaaacagtttcaacttgggtcatttctaggat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cccctcatggtcccgtcactaactggtgaaaacagtttcaacttgggtcatttctaggat 630
Query: 292 cggtcggacactgtttctctttcggatttagtttggtccgtaattaaggatgggctgaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cggtcggacactgtttctctttcggatttagtttggtccgtaattaaggatgggctgaat 690
Query: 352 agtgactgcttaatggtcgggtaaggtaaataaatgggtattagagaagaaggcgaaaag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agtgactgcttaatggtcgggtaaggtaaataaatgggtattagagaagaaggcgaaaag 750
Query: 412 aagatttttgtcctcgtgatgatgtggggtagggagtaaataggagtttaatatgacgaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aagatttttgtcctcgtgatgatgtggggtagggagtaaataggagtttaatatgacgaa 810
Query: 472 gaccagtgtcagacttagcgtcagtgatatattattatatatgtataaggtgatatgata 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaccagtgtcagacttagcgtcagtgatatattattatatatgtataaggtgatatgata 870
Query: 532 taatttataatactatcttctgcaatatagatagataatatgaagtaggtttattattag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 taatttataatactatcttctgcaatatagatagataatatgaagtaggtttattattag 930
Query: 592 tattcgatctctttctcatcgtacaagtctttcttttgcatcattgctttccattgttct 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tattcgatctctttctcatcgtacaagtctttcttttgcatcattgctttccattgttct 990
Query: 652 gggaagtcttcgacttcaacccatctctcgtaccatcctttttctctngagatattctta 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 991 gggaagtcttcgacttcaacccatctctcgtaccatcctttttctctgaggatattctta 1050
Query: 712 actggtgaacctgctactgngaaaaaccagcataacgtaacgtagataataaaagcggct 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 actggtgaacctgctactgggaaaaaccagcataacgtaacgtagataataaaagcggct 1110
Query: 772 gcgtaaccaataatgtagttcatgtagtacagatgcattgcggcatctgatactttgatg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 gcgtaaccaataatgtagttcatgtagtacagatgcattgcggcatctgatactttgatg 1170
Query: 832 ttatcaccaacttccccaacgaaccca-taatactgaaagacacagatcccanatacgcc 890
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct: 1171 ttatcaccaacttccccaacgaacccagtaatactgaaggacacagatcccagatacgcc 1230
Query: 891 acaagggct 899
|||||||||
Sbjct: 1231 acaagggct 1239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5485
Number of Sequences: 1807
Number of extensions: 5485
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)