BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF05RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1653 0.0
>3x_Contig1577
Length = 10627
Score = 1653 bits (834), Expect = 0.0
Identities = 865/873 (99%), Gaps = 2/873 (0%)
Strand = Plus / Minus
Query: 48 agatctttcatggtaaaatgactccacagtcgataaccatttgacgttgttttgaaccca 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7256 agatctttcatggtaaaaggactccacagtcgataaccatttgacgttgttttgaaccca 7197
Query: 108 tttattggtctcaggaaaaccctctttgatttcattaccaacagatatcgattcactcat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7196 tttattggtctcaggaaaaccctctttgatttcattaccaacagatatcgattcactcat 7137
Query: 168 ggtattaccacactcgactcctcgagttttgaattgcttcgtctttttctatgactttgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7136 ggtattaccacactcgactcctcgagttttgaattgcttcgtctttttctatgactttgt 7077
Query: 228 aatatgttattcgttccatcgatgattgtagatcaatcaaattatgaaattaatcaattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7076 aatatgttattcgttccatcgatgattgtagatcaatcaaattatgaaattaatcaattt 7017
Query: 288 caacatcgaatttggcagaacagaaatgacacatatacgcaagttaagaaaaaggttata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7016 caacatcgaatttggcagaacagaaatgacacatatacgcaagttaagaaaaaggttata 6957
Query: 348 tgtataaggtaaaggttagaagcaaccttaggaacatcaagcaaaggctttgtatacata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6956 tgtataaggtaaaggttagaagcaaccttaggaacatcaagcaaaggctttgtatacata 6897
Query: 408 ctctctgaatcattgatccaggttaaaaagatgtcatcctcaaatccacaaagaaatccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6896 ctctctgaatcattgatccaggttaaaaagatgtcatcctcaaatccacaaagaaatccg 6837
Query: 468 gtggtagatactccagaacagatagaaaggcgaagaatagtagagcagtttttattattt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6836 gtggtagatactccagaacagatagaaaggcgaagaatagtagagcagtttttattattt 6777
Query: 528 caagaatcgttaccgaaggtcaatgctctttcataccaatggctactcaatgaaatggtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6776 caagaatcgttaccgaaggtcaatgctctttcataccaatggctactcaatgaaatggtg 6717
Query: 588 cctatgtcaatggcagttgagaataatttaagccagttagatgaaaattccagcgtaagt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6716 cctatgtcaatggcagttgagaataatttaagccagttagatgaaaattccagcgtaagt 6657
Query: 648 tcgcagtctgttgaaccaacatctgacgaaataaatgaagaaatacacaaactatccttg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656 tcgcagtctgttgaaccaacatctgacgaaataaatgaagaaatacacaaactatccttg 6597
Query: 708 aataaactggaatatgtaccttctcacaaactaatcgcccaactttgccatgccagtgat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 aataaactggaatatgtaccttctcacaaactaatcgcccaactttgccatgccagtgat 6537
Query: 768 gaagtaaaggaaaaagttaccgagagattatacaagattggaagcggcatangcagttag 827
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 6536 gaagtaaaggaaaaagttaccgagagattatacaagattggaagcggcataggcagtaag 6477
Query: 828 atgacagaatttactaattttcagc-ataacccgaatctttcattttactcgatggacac 886
||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 6476 atgacagaa-ttactaattttcagcaataacccgaatctttcatttaactcgatggacac 6418
Query: 887 gtttagaatggttagattcatatgcaaggaagt 919
||| ||||||||||||||||||||||||||||
Sbjct: 6417 gttaggaatggttagattcatatgcaaggaagt 6385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7346
Number of Sequences: 1807
Number of extensions: 7346
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)