BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF08FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1695 0.0
>3x_Contig1771
Length = 25932
Score = 1695 bits (855), Expect = 0.0
Identities = 869/873 (99%), Gaps = 1/873 (0%)
Strand = Plus / Plus
Query: 87 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 14578
Query: 147 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 14638
Query: 207 aacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 aacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 14698
Query: 267 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 14758
Query: 327 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 14818
Query: 387 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14819 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 14878
Query: 447 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14879 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 14938
Query: 507 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14939 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 14998
Query: 567 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14999 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 15058
Query: 627 gaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtcttct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15059 gaccgacggatcgcctctacaaactctcttgtgtacacatcggggttccttccgtcttct 15118
Query: 687 atatactgtaaaacgtccaatggtactaggaaattctgtagttgtgactcgggatcgtta 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15119 atatactgtaaaacgtccaatggtactaggaaattctgtagttgtgactcgggatcgtta 15178
Query: 747 gcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccatacct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15179 gcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccatacct 15238
Query: 807 tgcattgaatcttcagttcctgggaaatcattaacataaacaccaagctcaatgaatgag 866
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15239 tgcattgaatcttcagttcctgggaaatcataaacataaacaccaagctcaatgaatgag 15298
Query: 867 tcaattatcgcagctaggcgttgttctgtctcaaccaaatcggtttgcaattnctctaag 926
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15299 tcaattatcgcagctaggcgttgttctgtctcaaccaaatcggtttgcaatttctctaag 15358
Query: 927 ntttgctctaccatctcgtnccgtatatctcgg 959
|||||||||||||||||| |||||||||||||
Sbjct: 15359 ttttgctctaccatctcgt-ccgtatatctcgg 15390
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6136
Number of Sequences: 1807
Number of extensions: 6136
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)