BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF08RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1655 0.0
>3x_Contig1697
Length = 16220
Score = 1655 bits (835), Expect = 0.0
Identities = 844/847 (99%)
Strand = Plus / Plus
Query: 48 caccggaaaagatcagattttcttctgtcctgcagtcactacgtatttcatacggacatg 107
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 10474 caccggaaaagatcagagttccttctgtcctgcagtcactacgtatttcatacggacatg 10533
Query: 108 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10534 aagtttcacaagtttcaaggtttgcaccagtatcctgcaagctgagttgacagcacccaa 10593
Query: 168 ttccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagttactg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10594 ttccccttccccaagcctaacaattattgtttgttttgcaccctccttctgtagttactg 10653
Query: 228 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10654 ctgtctttgtctttatatactaaatatttcagattaagggatcttgacatgaaacatctc 10713
Query: 288 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10714 ttccataattaaaagaaaaaatcgggggggatcaagaaactaacgacagtgagagaaaaa 10773
Query: 348 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10774 cacagacatcatcaaaaactacatccaatagcttacctattacgatttgttacgttaaga 10833
Query: 408 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10834 agttaatttctagagccaattgtaatattttgaaactcccgatttctcgttattgcagta 10893
Query: 468 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 tcgtttgttaaaagattttgtctttatctattgtcaagaatgaagaaacatcctactaca 10953
Query: 528 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 ggatcttgctcccggcaagattctggtagatccagaaataatcataatcgtagccattct 11013
Query: 588 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 cataagaacaattctgctgctgctgctgggatcaacaataatagtagaaacagatctgct 11073
Query: 648 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 ccgaattctggaattaatatcgaatgtgcaagttctgaacagggttttactcctcaacaa 11133
Query: 708 caaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagattat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11134 caaaaggccatcattcagcacttgttgatcactaagaattctgctcccaagaaagattat 11193
Query: 768 tcacacgtcccatgcaagtttttcgtgcaaggaaattgtcaagcgggagattcctgttcc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11194 tcacacgtcccatgcaagtttttcgtgcaaggaaattgtcaagcgggagattcctgtccc 11253
Query: 828 ttctctcacgatttgaacaattctacgagtgaacaagtatgtaagtattttcagaaaggg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11254 ttctctcacgatttgaacaattctacgagtgaacaagtatgtaagtattttcagaaaggg 11313
Query: 888 aattgca 894
|||||||
Sbjct: 11314 aattgca 11320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7871
Number of Sequences: 1807
Number of extensions: 7871
Number of successful extensions: 187
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)