BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF09FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 1473 0.0
3x_Contig1521 422 e-118
3x_Contig1722 412 e-115
3x_Contig631 402 e-112
3x_Contig939 337 2e-92
3x_Contig1675 319 6e-87
3x_Contig278 190 4e-48
3x_Contig869 151 3e-36
3x_Contig1651 127 4e-29
3x_Contig1670 105 2e-22
>3x_Contig1717
Length = 18389
Score = 1473 bits (743), Expect = 0.0
Identities = 821/839 (97%), Gaps = 7/839 (0%)
Strand = Plus / Minus
Query: 87 atcttggtgcaaagccacaagatgataagtccaatcaactactgtctacatcttgtcgac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 atcttggtgcaaagccacaagatgataagtccaatcaactactgtctacatcttgtcgac 1879
Query: 147 catgccatcttaactatatgttgtggctgaatctgtgctgcagatccaccgggaactttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 catgccatcttaactatatgttgtggctgaatctgtgctgcagatccaccgggaactttg 1819
Query: 207 taagtttcgcgaacaaaaaaaaaaacaattcacatatacgaacaaaaaagtaggtcgtac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 taagtttcgcgaacaaaaaaaaaaacaattcacatatacgaacaaaaaagtaggtcgtac 1759
Query: 267 ccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactataca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 ccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactataca 1699
Query: 327 accagttatcatgtcgtctggttttctttcagaactgatatctacatgttggaacttgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 accagttatcatgtcgtctggttttctttcagaactgatatctacatgttggaacttgtt 1639
Query: 387 ggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgatagttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 ggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgatagttt 1579
Query: 447 tgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaattag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 tgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaattag 1519
Query: 507 tagggatcagatctaaagacactaggtgcatctaattatactaggagatatatagctaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 tagggatcagatctaaagacactaggtgcatctaattatactaggagatatatagctaat 1459
Query: 567 caagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtatagtca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 caagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtatagtca 1399
Query: 627 cataccgcaacactacagctgtgtagagagtttctaaggaagctccttcatatgagaagn 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 cataccgcaacactacagctgtgtagagagtttctaaggaagctccttcatatgagaagt 1339
Query: 687 tatttnctaatcaattgcatgaagggagaattttcaggttttaagtaatggcgtggtttc 746
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 tatttcctaatcaattgcatgaagggagaattttcaggttttaagtaatggcgtggtttc 1279
Query: 747 tgtcgttcgttcttc-aatacacta-atatgtanngcgtttt-gtactgctatcgttaag 803
||||||||||||||| || |||| | ||||| ||||||| |||||||||||||||||
Sbjct: 1278 tgtcgttcgttcttcaaacacacaaccaatgta-ggcgtttttgtactgctatcgttaag 1220
Query: 804 acgtacctttagtttaattaaaaactgatccatattanacttcaaaatgatgtcagcgtt 863
|||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct: 1219 acgtacctttaggttaattaaaaactgatccatatcagacttcaaaatgatgtcagcg-t 1161
Query: 864 ttaagcaggtacttgcttttagcatacacttgaaaccaaaaacaaaatcgaaagtgttt 922
|||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1160 ttaagcaggtacttgc-tttagcatacac-tgaaaccaagaacaaaatcgaaagtgttt 1104
>3x_Contig1521
Length = 8057
Score = 422 bits (213), Expect = e-118
Identities = 240/249 (96%)
Strand = Plus / Minus
Query: 382 ttgttggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgat 441
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct: 4591 ttgttggaactagtcataattcatgaccgggtaataccaatataataggcggttaataat 4532
Query: 442 agttttgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctacta 501
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4531 agttttgtgtcactgacacataacaaagtatataaaccagtactcagatctaatctacta 4472
Query: 502 attagtagggatcagatctaaagacactaggtgcatctaattatactaggagatatatag 561
||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 4471 attagtaggaatcagatctacagacaccaggtgcatctaattattctaggagatatatag 4412
Query: 562 ctaatcaagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtat 621
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4411 ctaatcaagatggattcttctaataaagatctgataagatcaaagccacgtgacatgtat 4352
Query: 622 agtcacata 630
|||||||||
Sbjct: 4351 agtcacata 4343
>3x_Contig1722
Length = 17718
Score = 412 bits (208), Expect = e-115
Identities = 244/256 (95%)
Strand = Plus / Plus
Query: 383 tgttggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgata 442
|||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 2209 tgttggaactagtcataacgcatgaccgggtaatacaaatataataggcggttaataatg 2268
Query: 443 gttttgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaa 502
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2269 gttttgtgtcactgacacataacaaagtatataaaccagtactcagatctaatctactaa 2328
Query: 503 ttagtagggatcagatctaaagacactaggtgcatctaattatactaggagatatatagc 562
|||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct: 2329 ttagtaggaatcagatctacagacaccaggtgcatctaattattctaggagatatatagc 2388
Query: 563 taatcaagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtata 622
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2389 taatcaagatggattcttctaataaagatctgataagatcaaagccacgtgacatgtata 2448
Query: 623 gtcacataccgcaaca 638
|||||||||| |||||
Sbjct: 2449 gtcacataccacaaca 2464
>3x_Contig631
Length = 2339
Score = 402 bits (203), Expect = e-112
Identities = 242/255 (94%)
Strand = Plus / Plus
Query: 384 gttggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgatag 443
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 1149 gttggaactagtcataatgcatgaccgggtgataccaatataataggcggttaatgatag 1208
Query: 444 ttttgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaat 503
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 1209 ttttgtgtcactgacacatagcaaagtatataaaccagtactcagatctaatctactaat 1268
Query: 504 tagtagggatcagatctaaagacactaggtgcatctaattatactaggagatatatagct 563
|||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||
Sbjct: 1269 tagtagggatcagatctacagacaccaggtgcatctaattctactaggagatagatagct 1328
Query: 564 aatcaagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtatag 623
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1329 aatcaagatgaattcttctaataaagatctgacaagatctaagccacgtgacatgtacag 1388
Query: 624 tcacataccgcaaca 638
||| ||||| |||||
Sbjct: 1389 tcatataccacaaca 1403
>3x_Contig939
Length = 3877
Score = 337 bits (170), Expect = 2e-92
Identities = 215/229 (93%), Gaps = 2/229 (0%)
Strand = Plus / Minus
Query: 410 gggtaataccaatataataggcggttaatgatagttttgtgtcactgacacataacaaag 469
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 2482 gggtaataccaatataataggcggttaataatagttttgtgttactgacacataacaaag 2423
Query: 470 tatataaaccagtacttagatctaatctactaattagtagggatcagatctaaagacact 529
|||||||||||||||| |||| ||| || |||||||||||||| ||||||| ||||||
Sbjct: 2422 tatataaaccagtactcagatataacctgctaattagtaggga--agatctagagacacc 2365
Query: 530 aggtgcatctaattatactaggagatatatagctaatcaagatggattcttctaataaag 589
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2364 aggtgcatctaattctactaggatatatatagctaatcaagatggattcttctaataaag 2305
Query: 590 atctgacaagatcaaagccacgtgacatgtatagtcacataccgcaaca 638
||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 2304 atctgacaagatctaagccacgtgacatgtatagtcacataccgaaaca 2256
>3x_Contig1675
Length = 13954
Score = 319 bits (161), Expect = 6e-87
Identities = 233/257 (90%)
Strand = Plus / Minus
Query: 383 tgttggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgata 442
|||||||||||||||||||||||||| || |||||||||| ||||||||| ||||| |||
Sbjct: 4396 tgttggaactagtcataatgcatgaccggataataccaatgtaataggcgtttaataata 4337
Query: 443 gttttgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaa 502
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 4336 gttttgtatcactgacacataacaaagtatacaaaccagtactcagatctaatctactag 4277
Query: 503 ttagtagggatcagatctaaagacactaggtgcatctaattatactaggagatatatagc 562
||| |||| || | |||| |||||| |||| ||||||||| ||||||||| ||||||||
Sbjct: 4276 ttattaggaattgggtctagagacaccaggtacatctaattctactaggaggtatatagc 4217
Query: 563 taatcaagatggattcttctaataaagatctgacaagatcaaagccacgtgacatgtata 622
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4216 tgatcaagatggattcttctaataaagatctgataagatcaaagccacgtgacatgtata 4157
Query: 623 gtcacataccgcaacac 639
|| ||||| | ||||||
Sbjct: 4156 gttacatatcacaacac 4140
>3x_Contig278
Length = 1114
Score = 190 bits (96), Expect = 4e-48
Identities = 111/116 (95%)
Strand = Plus / Plus
Query: 231 acaattcacatatacgaacaaaaaagtaggtcgtacccggattcgaaccggggttgttcg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 acaattcacatatacgaacaaaaaagtaggtcgtacccggattcgaaccggggttgttcg 1025
Query: 291 gatcaaaaccgaaagtgataaccactacactatacaaccagttatcatgtcgtctg 346
||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||
Sbjct: 1026 gatcaaaaccgaaagtgataacctttacattatacaaccagctatcatgtcttctg 1081
>3x_Contig869
Length = 2873
Score = 151 bits (76), Expect = 3e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 250 aaaaaagtaggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 309
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 aaaaaggtaggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 1056
Query: 310 aaccactacactatacaacc 329
||||||||||||||||||||
Sbjct: 1057 aaccactacactatacaacc 1076
>3x_Contig1651
Length = 13087
Score = 127 bits (64), Expect = 4e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 258 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 317
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12965 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 13024
Query: 318 cactatacaacc 329
||||||| ||||
Sbjct: 13025 cactatagaacc 13036
>3x_Contig1670
Length = 9382
Score = 105 bits (53), Expect = 2e-22
Identities = 113/133 (84%)
Strand = Plus / Plus
Query: 387 ggaactagtcataatgcatgacagggtaataccaatataataggcggttaatgatagttt 446
||||||||||||||| |||||| |||||||||||||||||||| |||||| | ||||
Sbjct: 7756 ggaactagtcataatacatgacttggtaataccaatataataggtggttaacagttgttt 7815
Query: 447 tgtgtcactgacacataacaaagtatataaaccagtacttagatctaatctactaattag 506
| ||||||||||||| ||||||| |||||||| |||| |||||||||| |||| |||
Sbjct: 7816 tatgtcactgacacagaacaaagcatataaactgctactaagatctaatccactatttac 7875
Query: 507 tagggatcagatc 519
|| |||||||||
Sbjct: 7876 taatgatcagatc 7888
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,246
Number of Sequences: 1807
Number of extensions: 11246
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 10
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)