BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF11RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1750 1598 0.0
>3x_Contig1750
Length = 14427
Score = 1598 bits (806), Expect = 0.0
Identities = 843/850 (99%), Gaps = 4/850 (0%)
Strand = Plus / Plus
Query: 58 tatcttgaatgctttcttgatgggatctgccggtaatcagacaatcaattcgtggagaca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11143 tatcttgaatgctttcttgatgggatctgccggtaatcagacaatcaattcgtggagaca 11202
Query: 118 ggaagacgatagatcctctgaactgttccaaaacccatcttattggaccgacttggcaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11203 ggaagacgatagatcctctgaactgttccaaaacccatcttattggaccgacttggcaaa 11262
Query: 178 actattggaaaaggggaagttcaatgcagttttttttgcagatgttctaggtccgtacga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11263 actattggaaaaggggaagttcaatgcagttttttttgcagatgttctaggtccgtacga 11322
Query: 238 tgtctacaaaggtcccggtaactttggtccagttgctaaggctggatctcaatggccgat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11323 tgtctacaaaggtcccggtaactttggtccagttgctaaggctggatctcaatggccgat 11382
Query: 298 ctcagatccaagttacttcattccgttgatggcttcggttaccaagaatttggcttttgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11383 ctcagatccaagttacttcattccgttgatggcttcggttaccaagaatttggcttttgg 11442
Query: 358 tatgacgatctcgaccatcagtgaacaaccataccatcttgctcggcgattagggactct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11443 tatgacgatctcgaccatcagtgaacaaccataccatcttgctcggcgattagggactct 11502
Query: 418 ggaccttttgagtaatggtagagttggttggaatatagtgacttcttacttggacagtgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11503 ggaccttttgagtaatggtagagttggttggaatatagtgacttcttacttggacagtgc 11562
Query: 478 ctcaagaaacttattaggtggcgagacccttcctgaaaacgacgaaagatatgagagagc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11563 ctcaagaaacttattaggtggcgagacccttcctgaaaacgacgaaagatatgagagagc 11622
Query: 538 tgaagaatatgttgacgtagtatacaagttgtttttaagttcatggaaggatggcgctgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11623 tgaagaatatgttgacgtagtatacaagttgtttttaagttcatggaaggatggcgctgt 11682
Query: 598 aaaaaagaataaaaagacaggcatttttaccgatccagaaggtttgagacatatcaacca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11683 aaaaaagaataaaaagacaggcatttttaccgatccagaaggtttgagacatatcaacca 11742
Query: 658 cgaaggcaagtatttcaaagtgccaggtccttcaataacttctccaagtcaacagaagtt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11743 cgaaggcaagtatttcaaagtgccaggtccttcaataacttctccaagtcaacagaagtt 11802
Query: 718 gcccgttattatccaagcaggtgcatcttctaaaggtagggatcttgccgcaagaactgc 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11803 gcccgttattatccaagcaggtgcatctcctaaaggtagggatcttgccgcaagaactgc 11862
Query: 778 tgagattattttcttgtccaacaagaccaaagagtcgttacgtgaattcattcatgctgt 837
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 11863 tgagattattttcttgtccaacaagaccaaggagtcgttacgtgaatccattcatgctgt 11922
Query: 838 caaggccatcgcgagtg-aaagttcaagagaga-ttatccaaaatc-agtttttggcatt 894
||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 11923 caaggccatcgcgagtgaaaagttcaagagagacttatccaaaatcaagtttttggcatt 11982
Query: 895 -attactgtc 903
|||||||||
Sbjct: 11983 aattactgtc 11992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6226
Number of Sequences: 1807
Number of extensions: 6226
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)