BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZF12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1540 0.0
>3x_Contig1801
Length = 57606
Score = 1540 bits (777), Expect = 0.0
Identities = 857/881 (97%), Gaps = 2/881 (0%)
Strand = Plus / Plus
Query: 44 cttgcacaggtgggatcttgggttttggtgaaactgaagatgat-acatcgggttcgttc 102
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 14052 cttgcacaggtgggatcttgggtcttggtgaaactgaagatgatcacattgggttcgttc 14111
Query: 103 acactttggcaaatatgagtccacatccagaatctttacctattaatagattagtttcca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14112 acactttggcaaatatgagtccacatccagaatctttacctattaatagattagtttcca 14171
Query: 163 ttaaaggtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaatttttttttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 14172 ttaaaggtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaattggaattcg 14231
Query: 223 atgagatcttaagaaccgtggcactagccagaattgtattgccacaagcgattatcagat 282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14232 atgagatcttaagaaccgtggcactagccagaattgtaatgccacaagcgattatcagat 14291
Query: 283 tagctgcaggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14292 tagctgcaggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggtt 14351
Query: 343 gtaatgccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14352 gtaatgccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaag 14411
Query: 403 acaaagcaatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgcta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14412 acaaagcaatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgcta 14471
Query: 463 ataaggctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttaga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14472 ataaggctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttaga 14531
Query: 523 aacactttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactggg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14532 aacactttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactggg 14591
Query: 583 ggaatcattatttatccatattagtttaccaaatttataagctgcatattaagatgttag 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14592 ggaatcattatttatccatattagtttaccaaatttataagctgcatattaagatgttag 14651
Query: 643 ttatgacaaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttatta 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14652 ttatgacaaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttatta 14711
Query: 703 gttgtagttgtagttgtttgggaaaaagagcgcctcatacggttcaaaattcaagcagtg 762
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 14712 gttgtagttgtagttgtttgtgaaaaagagcgcctcagacggttcaaaattcaagcagtg 14771
Query: 763 gcagttttcttctcttgttctggggctgtggtttcggctggttcttcaccaccacattta 822
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 14772 gcagtttccttctcttgttctggggctgtggtttcggctggttcttcaccaccacattga 14831
Query: 823 gtgagcaaat-agtaacataagcgtttggttcgaaattttcaagcttaaatgatttcaaa 881
|||||||||| || |||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 14832 gtgagcaaataagaaacataagcgtttggttcgatattttcaagcttagatgagttcaaa 14891
Query: 882 gtatcttcgccaccgtatttttttgaaagacttttcaagta 922
||| ||||||||||||||| ||||| |||| |||||||||
Sbjct: 14892 gtagcttcgccaccgtattcttttggaagaactttcaagta 14932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8770
Number of Sequences: 1807
Number of extensions: 8770
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)