BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG01RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 1548 0.0
>3x_Contig534
Length = 2494
Score = 1548 bits (781), Expect = 0.0
Identities = 811/817 (99%), Gaps = 3/817 (0%)
Strand = Plus / Minus
Query: 52 caatctggtgtagtaccattt-aaagtccgagaagtttggtggctgtagaccttccttag 110
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 816 caatctggtgtag-accatttcaaagtccgagaagtttggtggctgtagaccttccttag 758
Query: 111 tgtagacctgcttggataattcagcagtaaccttaccgtagtaaacggtcttggtcaaca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgtagacctgcttggataattcagcagtaaccttaccgtagtaaacggtcttggtcaaca 698
Query: 171 gtgattgtgtcttgtgtgtcaaagaagaaactaaagattggactctggaaatcattgctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtgattgtgtcttgtgtgtcaaagaagaaactaaagattggactctggaaatcattgctg 638
Query: 231 ctcgacttttatctattgaatacactaaaccaaccaagctagaagtgtgagaccttgtaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctcgacttttatctattgaatacactaaaccaaccaagctagaagtgtgagaccttgtaa 578
Query: 291 tcttctatcaattgactcttgacttgatgctttagttcgatatctcttcatgtttggttc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcttctatcaattgactcttgacttgatgctttagttcgatatctcttcatgtttggttc 518
Query: 351 aattcaatgaaaattttgagggaaaagatcaacagtattacccggacatttgaaatatcc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aattcaatgaaaattttgagggaaaagatcaacagtattacccggacatttgaaatatcc 458
Query: 411 ggccaatcatatttgagaaccgttgacttaaacgtaagtgaagagtacttcacttcttgt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggccaatcatatttgagaaccgttgacttaaacgtaagtgaagagtacttcacttcttgt 398
Query: 471 aaagcttatgaatagcggtggtttactccatggctggtctgtatgccttatgggtttctg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaagcttatgaatagcggtggtttactccatggctggtctgtatgccttatgggtttctg 338
Query: 531 ttaaggttactgtgaccccgttttaccctggccattgatgtctttaagagttattatcat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaaggttactgtgaccccgttttaccctggccattgatgtctttaagagttattatcat 278
Query: 591 aattaaaagaattaagatggtttatggatgactatatgagaaaaactataaggtgatgac 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aattaaaagaattaagatggtttatggatgactatatgagaaaaactataaggtgatgac 218
Query: 651 ttccatcaacgttcgataacatcgtccaagttttgcctcactttacttttgttagtttcc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttccatcaacgttcgataacatcgtccaagttttgcctcactttacttttgttagtttcc 158
Query: 711 gatctgattgattcgatctttgctatgatttgagattgcacagctttcatttcccgtggg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gatctgattgattcgatctttgctatgatttgagattgcacagctttcatttcccgtggg 98
Query: 771 ttagcatcttgccattccctttatttgtaggtttgacccgatagat-ccagtatatacct 829
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct: 97 ttagcatcttgccattcccttaatttgtaggtttgacccgatagatcccagtatatactt 38
Query: 830 cttaccggggtatatatgccgtgtcttccttcccata 866
||||||| |||||||||||||||||||||||||||||
Sbjct: 37 cttaccgtggtatatatgccgtgtcttccttcccata 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)