BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG02FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1017 0.0
3x_Contig849 147 5e-35
>3x_Contig1512
Length = 8803
Score = 1017 bits (513), Expect = 0.0
Identities = 525/529 (99%)
Strand = Plus / Minus
Query: 87 ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaaactcataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaagg 470
Query: 147 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgattacgaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcag 410
Query: 207 agctgattacaatttcttttcaaaatctttcgctcgtatgggtaactcttaccacaagct 266
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agctgattacaaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagct 350
Query: 267 tggcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtacccc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tggcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtacccc 290
Query: 327 agatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agatatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatc 230
Query: 387 ttacatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttacatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaa 170
Query: 447 ggctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ggctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacga 110
Query: 507 tgccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgc 50
Query: 567 cattagagactgtgacaaagccatcgagaaggatccaaactttgtcaga 615
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 49 cattagagactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 147 bits (74), Expect = 5e-35
Identities = 118/128 (92%), Gaps = 4/128 (3%)
Strand = Plus / Minus
Query: 840 tgcatcaantttacaagaccctgtca-tgcaatctatactctcacaagctcagcanaatc 898
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 3472 tgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcagcaaaatc 3413
Query: 899 ctgctgctttaca-gaacacatgagaaacccagacgtcttc-agaagattc-aaccttga 955
||||||||||| | ||||||||||||||||||||||||||| |||| |||| |||||| |
Sbjct: 3412 ctgctgctttaaaggaacacatgagaaacccagacgtcttcaagaaaattcaaaccttaa 3353
Query: 956 tcgccgct 963
||||||||
Sbjct: 3352 tcgccgct 3345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5807
Number of Sequences: 1807
Number of extensions: 5807
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 2
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)