BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG02RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1608 0.0
>3x_Contig1801
Length = 57606
Score = 1608 bits (811), Expect = 0.0
Identities = 836/842 (99%), Gaps = 2/842 (0%)
Strand = Plus / Plus
Query: 45 caggtgggatcttggtttttggtgaaactgaagatgatc-cattgggttcgttcacactt 103
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14058 caggtgggatcttgggtcttggtgaaactgaagatgatcacattgggttcgttcacactt 14117
Query: 104 tggcaaatatgagtccacatccagaatctttacctattaatagattagtttccattaaag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14118 tggcaaatatgagtccacatccagaatctttacctattaatagattagtttccattaaag 14177
Query: 164 gtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaattggaattcgatgaga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14178 gtacaccaatgcatgaggaacttaagaaggtcagcagtaagaaattggaattcgatgaga 14237
Query: 224 tcttaagaaccgtggcactagccagaattgtaatgccacaagcgattatcagattagctg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14238 tcttaagaaccgtggcactagccagaattgtaatgccacaagcgattatcagattagctg 14297
Query: 284 caggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggttgtaatg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14298 caggtcgttacacgatgaaggaaactgaacaattcttatgcttcatggcaggttgtaatg 14357
Query: 344 ccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaagacaaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14358 ccatctttgtcggtaaaaagatgttaacaactatgtgtacaggctgggatgaagacaaag 14417
Query: 404 caatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgctaataagg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14418 caatgctttcgaaatggggtctacaaccaatggaatcgttttcatattccgctaataagg 14477
Query: 464 ctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttagaaacact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14478 ctccagctgaggcagcgtgtgccgggggccaataaagaatggccatcttttagaaacact 14537
Query: 524 ttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactgggggaatc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14538 ttctgtgtgtaatagtctttaatttctgtttattagttttctccatatactgggggaatc 14597
Query: 584 attatttatccatattagtttaccaaatttataagctgcatattaagatgttagttatga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14598 attatttatccatattagtttaccaaatttataagctgcatattaagatgttagttatga 14657
Query: 644 caaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttattagttgta 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14658 caaagggtaaatcggtcagtgagagagttagagaaaaagatggattagttattagttgta 14717
Query: 704 gttgtagttgtttgtgaaaaagagcgcctcagacggttcaaaattcaagcagtggcagtt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14718 gttgtagttgtttgtgaaaaagagcgcctcagacggttcaaaattcaagcagtggcagtt 14777
Query: 764 tccttctcttgntctggggctgtggtttcggctggttctttaccaccacattgagtgagc 823
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14778 tccttctcttgttctggggctgtggtttcggctggttcttcaccaccacattgagtgagc 14837
Query: 824 aaataagaaacataagcgtttggttcgatattttcaagcttagatgagtttcaaagtagc 883
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 14838 aaataagaaacataagcgtttggttcgatattttcaagcttagatgag-ttcaaagtagc 14896
Query: 884 tt 885
||
Sbjct: 14897 tt 14898
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6633
Number of Sequences: 1807
Number of extensions: 6633
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)