BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZG04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1533 1721 0.0
>3x_Contig1533
Length = 11082
Score = 1721 bits (868), Expect = 0.0
Identities = 873/875 (99%)
Strand = Plus / Plus
Query: 41 gcttcaatcgtcaggttcaattgttgtttagttcgttggtgaattaattggagaggtttc 100
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8677 gcttcaatcgtcaggttcaattgctgtttagttcgttggtgaattaattggagaggtttc 8736
Query: 101 attactgaagctggtaattacatttttttcatttaacttcactagagaaagaggccgcaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8737 attactgaagctggtaattacatttttttcatttaacttcactagagaaagaggccgcaa 8796
Query: 161 aagaaccaaccattttattgcaggcacatcatttgggatgactaccgacgttgcacctgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8797 aagaaccaaccattttattgcaggcacatcatttgggatgactaccgacgttgcacctgg 8856
Query: 221 cactatggaaaatgagacatctaaggtgatgtctttgaagcataaagctgcgtatgtgcc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857 cactatggaaaatgagacatctaaggtgatgtctttgaagcataaagctgcgtatgtgcc 8916
Query: 281 accgcccatcccacacgttgaaatgaatcagcttccgttgtccttattgctacgaaactt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8917 accgcccatcccacacgttgaaatgaatcagcttccgttgtccttattgctacgaaactt 8976
Query: 341 gacagtatttaccgccaaagagataagtcagtttttcaagctaaacgtccacacaggtgg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8977 gacagtatttaccgccaaagagataagtcagtttttcaagctaaacgtccacacaggtgg 9036
Query: 401 gaaaacaccatttgagaagaaactagagctacttaatatgatcctttttttgagaaacca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9037 gaaaacaccatttgagaagaaactagagctacttaatatgatcctttttttgagaaacca 9096
Query: 461 attcttgaaactttacgtcttggttaaatgggcaaagactttaaaacagaataatttcca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9097 attcttgaaactttacgtcttggttaaatgggcaaagactttaaaacagaataatttcca 9156
Query: 521 ttcgctaattgatcttttgaattggtttagaaatgctaacatgcaagtaaacaactgtac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9157 ttcgctaattgatcttttgaattggtttagaaatgctaacatgcaagtaaacaactgtac 9216
Query: 581 tatggctttgaagcaaatcttaggaacgatggctggagcaaagttacccaatccagatct 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9217 tatggctttgaagcaaatcttaggaacgatggctggagcaaagttacccaatccagatct 9276
Query: 641 agccacatcgttagaagttttaatgcttggaagaccgaatttgccgaatcacggatttaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9277 agccacatcgttagaagttttaatgcttggaagaccgaatttgccgaatcacggatttaa 9336
Query: 701 tttaaacggtagccaatccgataacttgacaatacctaacaaactgatactcaagagatt 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9337 tttaaacggtagccaatccgataacttgacaatacctaacaaactgatactcaagagatt 9396
Query: 761 gagggacctaaacacatgtttatcaattaagatttcattgatgacaattccttctcaatt 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397 gagggacctaaacacatgtttatcaattaagatttcattgatgacaattccttctcaatt 9456
Query: 821 ggcanagtatgaaatcaaagacggaagaattgttttcacagtaaaagatgaatttgagtt 880
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9457 ggcaaagtatgaaatcaaagacggaagaattgttttcacagtaaaagatgaatttgagtt 9516
Query: 881 gcaactatctacaatcgatcagaactcaccgttat 915
|||||||||||||||||||||||||||||||||||
Sbjct: 9517 gcaactatctacaatcgatcagaactcaccgttat 9551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7244
Number of Sequences: 1807
Number of extensions: 7244
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)